Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H21
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0260 - 21350060-21350269,21350544-21350604,21350834-213509...    29   4.2  

>02_04_0260 -
           21350060-21350269,21350544-21350604,21350834-21350901,
           21351274-21351483,21351684-21351724,21351923-21351972,
           21352084-21352172,21352265-21352339,21352539-21352656,
           21352689-21352771,21352854-21352970,21353857-21354074,
           21354184-21354241,21354356-21354508
          Length = 516

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 48  LCLIFLANQVQGYTVLV-ITALPFRSLNILGASVVSHLLNSGHEV 179
           + +IFL   VQG+ V + I+A+PF  L ++G  +   +    H+V
Sbjct: 310 MLIIFLLLNVQGWYVYIWISAVPFVMLLVVGTKLEHIITELAHQV 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,684,606
Number of Sequences: 37544
Number of extensions: 232089
Number of successful extensions: 481
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)