Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H21
         (650 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117265-1|AAI17266.1| 1323|Homo sapiens chromosome 11 open read...    32   1.5  
AJ430203-1|CAD22881.1| 1322|Homo sapiens EMSY protein protein.         32   1.5  
AK125484-1|BAC86178.1|  148|Homo sapiens protein ( Homo sapiens ...    32   2.0  

>BC117265-1|AAI17266.1| 1323|Homo sapiens chromosome 11 open reading
           frame 30 protein.
          Length = 1323

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +3

Query: 96  VITALPFRSLNILGASVVSHLLNSGHEVTYITTSPLKEKPN 218
           +IT +P +SL  LG  ++S  + SG   T ITT P+  KPN
Sbjct: 540 IITVVP-KSLATLGGKIISSNIVSG-TTTKITTIPMTSKPN 578


>AJ430203-1|CAD22881.1| 1322|Homo sapiens EMSY protein protein.
          Length = 1322

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +3

Query: 96  VITALPFRSLNILGASVVSHLLNSGHEVTYITTSPLKEKPN 218
           +IT +P +SL  LG  ++S  + SG   T ITT P+  KPN
Sbjct: 539 IITVVP-KSLATLGGKIISSNIVSG-TTTKITTIPMTSKPN 577


>AK125484-1|BAC86178.1|  148|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43495 fis, clone PEBLM2000338. ).
          Length = 148

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 449 CIYVXCNDHIKTFIRVLY*LLYVFVFECHQCVC 351
           CIYV    H+  ++  +Y  +YV V   H CVC
Sbjct: 12  CIYVCIYIHVFVYVCYIYLYVYVCVIYIHVCVC 44


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,785,746
Number of Sequences: 237096
Number of extensions: 1307853
Number of successful extensions: 2335
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2335
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)