Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H21
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    26   0.27 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    24   1.1  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    24   1.1  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = +3

Query: 318 NNIFDLQNITIANALMTFENEDVKKLIQNTNESFDVVIAXYIDTEVYAAFSALYGCPLIW 497
           +N+F + N+ I+N LM F       +    N  ++  +   +  ++YA   +L+GC  IW
Sbjct: 87  SNLFVI-NLAISNFLMMFCMSPPMVI----NCYYETWVLGPLFCQIYAMLGSLFGCGSIW 141

Query: 498 LSSL 509
             ++
Sbjct: 142 TMTM 145


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 450 EVYAAFSALYGCPLIWLSSL 509
           ++YA   +L+GC  IW  ++
Sbjct: 92  QIYAMLGSLFGCGSIWTMTM 111


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 450 EVYAAFSALYGCPLIWLSSL 509
           ++YA   +L+GC  IW  ++
Sbjct: 2   QIYAMLGSLFGCGSIWTMTM 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,445
Number of Sequences: 438
Number of extensions: 3044
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)