Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H20
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638     30   1.7  
01_06_1682 - 39130696-39131705,39132355-39132583                       29   3.9  
03_06_0410 - 33728507-33729415,33729511-33729654,33730054-337309...    28   5.1  
02_05_1094 + 34060262-34060385,34061256-34061428,34061505-340616...    28   6.8  
06_03_0998 - 26742608-26742802,26743137-26743325,26743600-267436...    27   8.9  

>12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638
          Length = 504

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 454 LNV*TLNIXVIYXRKII*IXKCFPHCVLYVYSQCCHS 564
           + +  +N+ V+   K+I + +CFP C+  +Y +CC S
Sbjct: 349 MRILAINMFVLNLAKVIDLMRCFP-CLEKLYLKCCLS 384


>01_06_1682 - 39130696-39131705,39132355-39132583
          Length = 412

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
 Frame = +3

Query: 345 MXIASFKKSRQYGVFCCCPHHSLTMSKVTVIYFF---YCFECLNSKHXSNI*XKNNLNXK 515
           M IA+F    +       P  SLT +   VI      YC+ C N  H      K +L   
Sbjct: 19  MLIATFAMLTEGATSLSPPSLSLTPTYAPVIKVIGKVYCYRCFNEAHPEESHGKEHLKGA 78

Query: 516 MFSTLC 533
           M    C
Sbjct: 79  MVKVTC 84


>03_06_0410 -
           33728507-33729415,33729511-33729654,33730054-33730920,
           33731371-33731913
          Length = 820

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +2

Query: 173 ELNSINSFFRQXNMNPCLVESXMIINFNNKIDLEQLFNTFHGICNTNAEKQSLCPNN 343
           E   +NS+ R          + M INF   +++E  FNT  G  + +   +  CPNN
Sbjct: 648 ETIDLNSWTRSGGPLMRTSSADMFINFIQNLEIESEFNT--GNSSGSTVSKDSCPNN 702


>02_05_1094 +
           34060262-34060385,34061256-34061428,34061505-34061686,
           34061789-34062073,34062160-34062218,34062349-34062385,
           34062485-34062556,34063613-34063937,34064027-34064410
          Length = 546

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 390 CCCPHHSLTMSKV 428
           CCCPH S T S+V
Sbjct: 131 CCCPHRSYTYSRV 143


>06_03_0998 -
           26742608-26742802,26743137-26743325,26743600-26743657,
           26743990-26744056,26744368-26746504
          Length = 881

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 387 FCCCPHHSLTMSKVTVIYFFYCFECLNSKH 476
           FCCC +  +  + V+    F CF  L  KH
Sbjct: 560 FCCCRNFKMVKTVVSYHLRFSCFLTLAEKH 589


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,268,534
Number of Sequences: 37544
Number of extensions: 209549
Number of successful extensions: 363
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)