Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H20
         (615 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-1386|AAF50475.2|  491|Drosophila melanogaster CG7476-PA...    29   3.8  
AE014296-1385|AAO41271.1|  475|Drosophila melanogaster CG7476-PB...    29   3.8  

>AE014296-1386|AAF50475.2|  491|Drosophila melanogaster CG7476-PA,
           isoform A protein.
          Length = 491

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -1

Query: 213 IXYCLKKLFIEFNSTLFEHIQLGN*LFSVEFSQ*YSFRL--NIWLSVLEYCHTKMIYLS 43
           I  C+   FI+    + +H+ L N + S      + FR+  N+WLSV+ Y HT  +  S
Sbjct: 254 IVCCIVSRFIQCLIMILDHLNLLNGICSPAGYSSHFFRMASNLWLSVISY-HTWKVLTS 311


>AE014296-1385|AAO41271.1|  475|Drosophila melanogaster CG7476-PB,
           isoform B protein.
          Length = 475

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -1

Query: 213 IXYCLKKLFIEFNSTLFEHIQLGN*LFSVEFSQ*YSFRL--NIWLSVLEYCHTKMIYLS 43
           I  C+   FI+    + +H+ L N + S      + FR+  N+WLSV+ Y HT  +  S
Sbjct: 238 IVCCIVSRFIQCLIMILDHLNLLNGICSPAGYSSHFFRMASNLWLSVISY-HTWKVLTS 295


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,530,368
Number of Sequences: 53049
Number of extensions: 409503
Number of successful extensions: 594
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2517878700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)