Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H20
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   4.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   5.5  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   7.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   7.2  

>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 495 KNNLNXKMFSTLCAICIFPMLS 560
           + N+N ++F T C +  FP  S
Sbjct: 67  QGNINNQLFQTPCELLNFPKRS 88


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 468 SLNIQSNKRNISLSP*TLLKNDEDNN 391
           S  I  N + I LSP T +KN   NN
Sbjct: 15  SPQILKNDKRIYLSPRTPIKNVYKNN 40


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 273 NNFSTLFMEYVIQMQRSSLFVP 338
           NN+  L+  Y+I +++  + VP
Sbjct: 111 NNYKKLYKNYIINIEQIPVPVP 132


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 273 NNFSTLFMEYVIQMQRSSLFVP 338
           NN+  L+  Y+I +++  + VP
Sbjct: 111 NNYKKLYKNYIINIEQIPVPVP 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,898
Number of Sequences: 438
Number of extensions: 2905
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)