Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H19
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   105   6e-24
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    25   5.4  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   5.4  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   9.5  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    25   9.5  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  105 bits (251), Expect = 6e-24
 Identities = 47/90 (52%), Positives = 71/90 (78%)
 Frame = +3

Query: 150 PCSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMXVYRKKFVVYIXRIQXEKANG 329
           P SKELR+++ ++S+P+R+DD++ V+RG  KG++ GK+  VYRKKF++ I R+  EKANG
Sbjct: 33  PLSKELREQYKIRSLPVRRDDQITVIRGSNKGRE-GKITSVYRKKFLLLIERVTREKANG 91

Query: 330 ATAYVGIHPSKCVIVKLNMNKDRKAILDRR 419
           A+A VGI  SK VI KL+++KDRK ++ R+
Sbjct: 92  ASAPVGIDASKVVITKLHLDKDRKDLIVRK 121



 Score = 58.0 bits (134), Expect = 8e-10
 Identities = 30/53 (56%), Positives = 37/53 (69%)
 Frame = +2

Query: 53  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLL*GTKTKIQCKIHAYSQRR 211
           MKF++ VTSSRRK RK HF APS +RRVLMS+PL    + + Q KI +   RR
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPL--SKELREQYKIRSLPVRR 51


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 537 IFKNFIYVKNYLFKRPPW-LWQFPRCIYXCXCQ-VQPVCPLLC 415
           IF    +VK   FKR PW L +F +      C  V  + P+LC
Sbjct: 426 IFLRVFFVKEDEFKRGPWHLGKFSKINGYAACAFVLLMVPILC 468


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
 Frame = +2

Query: 11  ISVLSRVVLAKSDRMKFNKQVTSSRRKNRKR--HFSAPSHIRRVLMSSPLL*GTKTKIQC 184
           +S  S ++         N   TSS+R N K    FS  S    V   +    GT   +  
Sbjct: 79  LSTSSPLISTSGQFTSNNVSTTSSQRHNTKTITFFSGTSDYTSVYYDTT---GTDDVVY- 134

Query: 185 KIHAYSQRR*SSGCTWTLQRPTGWQSDAXVS 277
           + H  S+R  S+  TW+   PT   + A  S
Sbjct: 135 EYHPSSERHKSTNDTWSTNLPTNPTTTAIYS 165


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/40 (20%), Positives = 20/40 (50%)
 Frame = +1

Query: 28   CRFGEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASVDVL 147
            C F  ++ +E++  G +L  +    +F C   +   V+++
Sbjct: 3300 CEFHHQKFDEIEVPGQYLLHKDNNNSFSCIERFLPEVELI 3339


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 458 TXVFAKCSQXALCSAIEDCFAVF 390
           T  F   S   LCS +E CF VF
Sbjct: 507 TPAFNLQSCFLLCSLVEQCFGVF 529


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,045
Number of Sequences: 5004
Number of extensions: 40273
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)