Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H19
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0263 + 2136858-2137331                                          131   3e-31
12_01_0323 - 2459854-2460306                                          130   7e-31
11_01_0317 - 2365493-2365786,2365825-2365953                           95   4e-20
11_06_0506 - 24380469-24380632,24381737-24383893,24384488-243845...    27   7.2  

>01_01_0263 + 2136858-2137331
          Length = 157

 Score =  131 bits (317), Expect = 3e-31
 Identities = 63/103 (61%), Positives = 82/103 (79%)
 Frame = +3

Query: 156 SKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMXVYRKKFVVYIXRIQXEKANGAT 335
           S ELR K+NV+S+PIRKDDEVQVVRG YKG++ GKV+ VYR+++V+++ RI  EK NG+T
Sbjct: 35  SSELRHKYNVRSIPIRKDDEVQVVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGST 93

Query: 336 AYVGIHPSKCVIVKLNMNKDRKAILDRRAKGXLAALGKXXGKY 464
             VGIHPSK V+ KL ++KDRKAILDR+A+G   A  K  GK+
Sbjct: 94  VNVGIHPSKVVVTKLKLDKDRKAILDRKARG--RAADKAKGKF 134



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = +2

Query: 53  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPL 154
           MK N +VTSSRRK RK HF+APS +RRVLMS+ L
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAAL 34


>12_01_0323 - 2459854-2460306
          Length = 150

 Score =  130 bits (314), Expect = 7e-31
 Identities = 63/103 (61%), Positives = 81/103 (78%)
 Frame = +3

Query: 156 SKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMXVYRKKFVVYIXRIQXEKANGAT 335
           S ELR K+NV+S+PIRKDDEVQVVRG YKG++ GKV+ VYR+++V+++ RI  EK NG+T
Sbjct: 35  STELRHKYNVRSIPIRKDDEVQVVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGST 93

Query: 336 AYVGIHPSKCVIVKLNMNKDRKAILDRRAKGXLAALGKXXGKY 464
             VGIHPSK V+ KL ++KDRKAILDR+A G   A  K  GK+
Sbjct: 94  VNVGIHPSKVVVTKLKLDKDRKAILDRKASG--RAADKAKGKF 134



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = +2

Query: 53  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPL 154
           MK N +VTSSRRK RK HF+APS +RRVLMS+ L
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAAL 34


>11_01_0317 - 2365493-2365786,2365825-2365953
          Length = 140

 Score = 94.7 bits (225), Expect = 4e-20
 Identities = 46/81 (56%), Positives = 61/81 (75%)
 Frame = +3

Query: 222 VVRGHYKGQQVGKVMXVYRKKFVVYIXRIQXEKANGATAYVGIHPSKCVIVKLNMNKDRK 401
           VVRG YKG++ GKV+ VYR+++V+++ RI  EK NG+T  VGIHPSK V+ KL ++KDRK
Sbjct: 44  VVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRK 102

Query: 402 AILDRRAKGXLAALGKXXGKY 464
           AILDR+A G   A  K  GK+
Sbjct: 103 AILDRKASG--RAADKAKGKF 121



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = +2

Query: 53  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPL 154
           MK N +VTSSRRK RK HF+APS +RRVLMS+ L
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAAL 34


>11_06_0506 - 24380469-24380632,24381737-24383893,24384488-24384541,
            24384543-24384597,24384914-24384916,24385192-24385231,
            24385576-24385632,24388124-24388412,24389764-24389771,
            24390633-24390688,24391207-24391488,24391651-24391811,
            24391887-24392121,24392860-24392943,24393022-24393117,
            24393333-24394055,24396523-24396987
          Length = 1642

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 22/78 (28%), Positives = 36/78 (46%)
 Frame = -1

Query: 296  VYNKLFTIHXHHFANLLAFVVSTYNLNFIVFANRHGFYIEFLS*FLRAGERTSTLALYVK 117
            ++N L     HH   L  +  +   + +++F       +E +S  LRA   + T AL VK
Sbjct: 1161 LFNILLVWGNHHQHKLNGYSRADVIVTYVLFVG--AVILETMS-LLRAMFSSWTCALLVK 1217

Query: 116  EH*NASSCFSFLRKSPAC 63
            +    S+  +FL   PAC
Sbjct: 1218 KGSEGSNVCNFLAHIPAC 1235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,134,631
Number of Sequences: 37544
Number of extensions: 261392
Number of successful extensions: 552
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)