Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_H19
(539 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68315-8|CAA92674.1| 142|Caenorhabditis elegans Hypothetical pr... 117 5e-27
Z68315-10|CAD59149.1| 109|Caenorhabditis elegans Hypothetical p... 91 6e-19
Z68315-9|CAA92678.1| 106|Caenorhabditis elegans Hypothetical pr... 91 6e-19
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical p... 29 2.8
Z98877-2|CAB11570.1| 907|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z69904-1|CAA93777.1| 420|Caenorhabditis elegans Hypothetical pr... 27 8.6
AC006674-1|AAK68390.1| 388|Caenorhabditis elegans Nuclear hormo... 27 8.6
>Z68315-8|CAA92674.1| 142|Caenorhabditis elegans Hypothetical
protein F28C6.7a protein.
Length = 142
Score = 117 bits (282), Expect = 5e-27
Identities = 53/105 (50%), Positives = 76/105 (72%)
Frame = +3
Query: 150 PCSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMXVYRKKFVVYIXRIQXEKANG 329
P +KELR K ++++PIR DDEV V+RG +KG G+V+ YRKKFV++I +I EKANG
Sbjct: 33 PLTKELRTKHGIRAIPIRTDDEVVVMRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANG 91
Query: 330 ATAYVGIHPSKCVIVKLNMNKDRKAILDRRAKGXLAALGKXXGKY 464
+T ++GIHPSK I KL ++KDR+A+++R+A G G GK+
Sbjct: 92 STVHIGIHPSKVAITKLKLDKDRRALVERKAAGRSRVTGILKGKH 136
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +2
Query: 53 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLL*GTKTK 175
MK N V+S K+RK HF+APSH RR +MS+PL +TK
Sbjct: 1 MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTK 41
>Z68315-10|CAD59149.1| 109|Caenorhabditis elegans Hypothetical
protein F28C6.7c protein.
Length = 109
Score = 90.6 bits (215), Expect = 6e-19
Identities = 40/71 (56%), Positives = 55/71 (77%)
Frame = +3
Query: 150 PCSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMXVYRKKFVVYIXRIQXEKANG 329
P +KELR K ++++PIR DDEV V+RG +KG G+V+ YRKKFV++I +I EKANG
Sbjct: 33 PLTKELRTKHGIRAIPIRTDDEVVVMRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANG 91
Query: 330 ATAYVGIHPSK 362
+T ++GIHPSK
Sbjct: 92 STVHIGIHPSK 102
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +2
Query: 53 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLL*GTKTK 175
MK N V+S K+RK HF+APSH RR +MS+PL +TK
Sbjct: 1 MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTK 41
>Z68315-9|CAA92678.1| 106|Caenorhabditis elegans Hypothetical
protein F28C6.7b protein.
Length = 106
Score = 90.6 bits (215), Expect = 6e-19
Identities = 40/71 (56%), Positives = 55/71 (77%)
Frame = +3
Query: 150 PCSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMXVYRKKFVVYIXRIQXEKANG 329
P +KELR K ++++PIR DDEV V+RG +KG G+V+ YRKKFV++I +I EKANG
Sbjct: 33 PLTKELRTKHGIRAIPIRTDDEVVVMRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANG 91
Query: 330 ATAYVGIHPSK 362
+T ++GIHPSK
Sbjct: 92 STVHIGIHPSK 102
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +2
Query: 53 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLL*GTKTK 175
MK N V+S K+RK HF+APSH RR +MS+PL +TK
Sbjct: 1 MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTK 41
>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
protein C16A3.7 protein.
Length = 1119
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -3
Query: 468 RCIYXCXCQVQPVCPLLCDRGLLCGLYSCST*QSHTLKGECRHML 334
+C C Q + C +C++ L CG+++C H G+CR L
Sbjct: 569 KCQEVCCIQDEHFCLQMCNKRLSCGIHTCEN-VCHA--GQCRPCL 610
>Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical
protein Y69H2.11 protein.
Length = 887
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = +3
Query: 132 EC*CPLPCSKE----LRQKFNVKSMPI--RKDDEVQVVRGHYKGQ 248
+C CPLPCS + K N ++PI K +V + HY Q
Sbjct: 778 DCVCPLPCSNQEYSVTWSKANFVNLPIICGKSSDVSTCKAHYIDQ 822
>Z98877-2|CAB11570.1| 907|Caenorhabditis elegans Hypothetical
protein Y69H2.2 protein.
Length = 907
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Frame = +3
Query: 135 C*CPLPCSKE----LRQKFNVKSMPI--RKDDEVQVVRGHYKGQ 248
C CPLPCS + K N ++PI K +V + YK Q
Sbjct: 799 CVCPLPCSNQEYSVTWSKANFVNLPITCEKSSDVATCQKQYKDQ 842
>Z69904-1|CAA93777.1| 420|Caenorhabditis elegans Hypothetical
protein ZK20.1 protein.
Length = 420
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 418 LRSRIALRSLFMFNLTITHFEG*MPTYAVAPLAFS 314
+ S I LFM NL T+ +G +P + +PLA++
Sbjct: 356 MESWIEEHKLFMENLLNTYIQGSLPVHLRSPLAWT 390
>AC006674-1|AAK68390.1| 388|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 119 protein.
Length = 388
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 534 FKNFIYVKNYLFKRPPWLWQFPRCI 460
F NF+++KN+L + +F +CI
Sbjct: 79 FSNFLFLKNFLIPKTSRFCRFKKCI 103
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,570,455
Number of Sequences: 27780
Number of extensions: 241088
Number of successful extensions: 610
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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