Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H15
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    33   0.027
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    26   5.5  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    26   5.5  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   9.5  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 33.5 bits (73), Expect = 0.027
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = -3

Query: 499 LTVIVRYTNPAKTRTRRQDAKRT*NLMLPGRLLCSPITQAMLTSNHAAFITVIRSTT 329
           LT IVRY NP K + R Q   R  + + P  ++ + +T ++   + ++F+  ++  T
Sbjct: 419 LTPIVRYKNPVKNKKRSQLTSRISSSVSPSNVIPNSLTSSVSNFSVSSFLNNLKEDT 475


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
 Frame = +3

Query: 174 LRICCFILGYLTM----FTNVCNTGLLFTLTTYIGADTSTLPALQSSETPLISGTEVVLL 341
           L  CC +LG +++    +T++   G LF       A       + S+ +PL      + +
Sbjct: 76  LNYCCELLGGISVTRFVYTSISTMGGLFVYLIAKQARVLDPNQVLSTCSPLW-----ISV 130

Query: 342 MTVINAAWLLVNIACVIGLHRRRPGNIKFYVLFASCRLVLVFAGLVYLTITVRTPVLML 518
           + ++N    L  IAC   +       +  Y  FASC    ++A  + LT+ +    L+L
Sbjct: 131 IYLLNPLTFLPGIACSADMILNFTTLMTIY--FASCGSYAIYACCMALTVFINPNALLL 187


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 17  QPVTRQPFATPNVITVCANSKHS 85
           Q +T QP A  N+I+V A S HS
Sbjct: 269 QGLTPQPLALKNIISVGAGSYHS 291


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 320 WDRSRASDDSNKCCMVACQ 376
           W R     D+N  C +ACQ
Sbjct: 58  WYREAMMSDANDACQIACQ 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,278
Number of Sequences: 5004
Number of extensions: 49567
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)