Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H15
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1566 + 27909297-27909390,27909542-27909645,27912899-279130...    30   1.9  
07_01_0563 + 4178176-4178295,4178391-4178834                           29   3.2  
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442...    29   3.2  
07_03_1395 - 26255776-26256043,26256194-26256414,26256550-262567...    29   4.3  
10_08_0784 + 20529526-20529604,20529996-20530562,20530687-205316...    28   7.5  

>08_02_1566 +
           27909297-27909390,27909542-27909645,27912899-27913098,
           27913214-27913314,27913427-27914130,27914671-27914834,
           27914941-27915100
          Length = 508

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +3

Query: 477 VYLTITVRTPVLMLHRLDIVVASFFIMVYNTYARQ 581
           VY+ +  R P+ +LH +++++   F  +Y+  ARQ
Sbjct: 402 VYMLVKYRLPLEILHLVNLLLCGLFSRLYSNLARQ 436


>07_01_0563 + 4178176-4178295,4178391-4178834
          Length = 187

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 361 AAFITVIRSTTSVPLMRGVSEDCRAGKVL 275
           AA  TV+ + + VPL+RG S + R+G V+
Sbjct: 126 AATATVLSAASLVPLLRGESAEARSGGVM 154


>02_02_0421 -
           10042184-10042197,10042442-10042822,10044158-10044261,
           10044634-10044734,10044806-10045147,10045981-10046158,
           10047696-10047776,10049190-10049449
          Length = 486

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 10/50 (20%)
 Frame = +3

Query: 69  RIQNIPNFVKMTK-------PIPYNTLSS---TSSLGKKYCHCFQLRICC 188
           +I+N PN V + K       PIP +        S   KKYC CFQ  I C
Sbjct: 161 KIENSPNTVTVRKDNSEAIPPIPKHNKGCHCRKSECLKKYCECFQANILC 210


>07_03_1395 -
           26255776-26256043,26256194-26256414,26256550-26256786,
           26257476-26257776,26258027-26258106
          Length = 368

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 444 SCRLVLVFAGLVYLTITVRTPVLMLHRLDIVVASFFIMVYNTYARQLVNE 593
           S RL+L  AGL Y    + T  ++ + + I VA    + +  YA++ ++E
Sbjct: 280 SGRLILTLAGLKYHNHRLTTVEIVYNVISITVAFLVAIGFTVYAKRALDE 329


>10_08_0784 +
           20529526-20529604,20529996-20530562,20530687-20531639,
           20532292-20532479,20532578-20533013
          Length = 740

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = +3

Query: 309 PLISGTEVVLLMTVINAAWLLVNIACVIGLHRRRPGNIKFYVLFASCRLVLVFAGLVYLT 488
           PLI G  +++ M++I A  +      V     RRP  I   VL+    LV+++A  VY+ 
Sbjct: 42  PLIEG--LIVAMSLIGATIITTFSGAVADSFGRRPMLIASAVLYFVSGLVMLWAPNVYVL 99

Query: 489 ITVR 500
           +  R
Sbjct: 100 LLAR 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,279,666
Number of Sequences: 37544
Number of extensions: 340807
Number of successful extensions: 871
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)