Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H15
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical...    29   2.9  
AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine re...    29   3.8  
Z93383-7|CAB07621.1|  285|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U53181-7|AAA93487.1|  472|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
           protein Y75B8A.26 protein.
          Length = 1144

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 9/39 (23%), Positives = 24/39 (61%)
 Frame = +3

Query: 447 CRLVLVFAGLVYLTITVRTPVLMLHRLDIVVASFFIMVY 563
           C   L+ A ++ + I++ TP+ ++    +++  +F+M+Y
Sbjct: 702 CTQTLLNACMILVLISISTPIFLVCAAPLILIYYFVMIY 740


>AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 66 protein.
          Length = 286

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
 Frame = +3

Query: 474 LVYLTI---TVRTPVLMLHRLDIVVASFFIMVYNTYARQL 584
           LV+ TI    +R  +++L  LD VVASFF + Y+ + R++
Sbjct: 84  LVWPTIPLGAIRATLVLLITLDRVVASFFPIFYHNHRRRI 123


>Z93383-7|CAB07621.1|  285|Caenorhabditis elegans Hypothetical
           protein F54B8.8 protein.
          Length = 285

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 453 LVLVFAGLVYLTITVRTPVLMLHRLDIVVASFFIMVYNTYARQLVN 590
           L+ +    + L  TVR+ +  L  +D V+ SFF + Y  +  +L N
Sbjct: 84  LIFLLIWPILLVGTVRSTLTFLVTMDRVIGSFFPIFYYNHRHKLSN 129


>U53181-7|AAA93487.1|  472|Caenorhabditis elegans Hypothetical
           protein F36D4.4 protein.
          Length = 472

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 324 TEVVLLMTVINAAWLLVNIACVIGL--HRRRPGNIKFYVLFASCRLVLVFAGL 476
           T  V L   + A  +++N+  +I L  HRRR  +  FYV+   C ++ V  G+
Sbjct: 23  TTAVFLCGHLGALSVILNLFVIIALLRHRRRVLSNVFYVIVLHCAVLDVARGV 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,699,945
Number of Sequences: 27780
Number of extensions: 293178
Number of successful extensions: 773
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)