Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H14
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   163   9e-42
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   163   9e-42
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    29   0.20 
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    29   0.27 
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.36 
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    26   2.5  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   3.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    24   7.7  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    24   7.7  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    24   7.7  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  163 bits (396), Expect = 9e-42
 Identities = 72/125 (57%), Positives = 94/125 (75%)
 Frame = +3

Query: 27  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 206
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60

Query: 207 ARVRKNTEARXKGRHCGFGKRRGTANARMPXKELWXXXXXXXXXXXXXYXTAKKIDRHLY 386
            R+RK   A+  GRH G+GKR+GTA ARMP   +W             Y  + KID+HLY
Sbjct: 61  FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLY 120

Query: 387 HSLYM 401
           H+LY+
Sbjct: 121 HTLYL 125


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  163 bits (396), Expect = 9e-42
 Identities = 72/125 (57%), Positives = 94/125 (75%)
 Frame = +3

Query: 27  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 206
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60

Query: 207 ARVRKNTEARXKGRHCGFGKRRGTANARMPXKELWXXXXXXXXXXXXXYXTAKKIDRHLY 386
            R+RK   A+  GRH G+GKR+GTA ARMP   +W             Y  + KID+HLY
Sbjct: 61  FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLY 120

Query: 387 HSLYM 401
           H+LY+
Sbjct: 121 HTLYL 125


>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 29.5 bits (63), Expect = 0.20
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 229 SVFLRTRAREWTATGFLMTRPSLIILRMFC 140
           S F  T  REWT    L T    +++R FC
Sbjct: 85  STFWETMGREWTGIDILRTDKFYLLMRRFC 114


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 29.1 bits (62), Expect = 0.27
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 170 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 81
           +I +H++DV  G+ V  LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 28.7 bits (61), Expect = 0.36
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 149 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 54
           +VLS +    ++D  +  PHLL  +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 15  TAVRMSSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 155
           T ++ S + + K L  S MRCG+K    W++ + +    NT+   +  K
Sbjct: 312 THLQDSYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 141 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARXKGRHCG 257
           +++R  +KD +   +PV+V S A   ++T     G   G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +3

Query: 129  TNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNT 227
            T S   ++ +IK+    +KP    ++++++KN+
Sbjct: 912  TESLNQVKNLIKNDTSNRKPFGAENQSKLKKNS 944


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 39   KLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDG 170
            +L +RLAA + RC  ++ W D          +   NI+K+I DG
Sbjct: 1113 QLAERLAARLDRCKTQRQW-DHVVYALSLLPHKADNIQKLIDDG 1155


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 270 FSYQSHSDDPXYVPLCFCGHGR 205
           FS  + +D+P Y P+  CG G+
Sbjct: 37  FSQCAITDEPLYPPIVSCGLGK 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,686,816
Number of Sequences: 5004
Number of extensions: 31863
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)