Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_H14
(403 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal pro... 172 9e-44
Z35604-5|CAA84680.2| 269|Caenorhabditis elegans Hypothetical pr... 29 0.94
Z81508-5|CAB04138.1| 357|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical pr... 27 6.7
U42835-1|AAA83585.1| 87|Caenorhabditis elegans Hypothetical pr... 27 6.7
AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRN... 27 6.7
U52002-7|AAB37730.3| 715|Caenorhabditis elegans Heparan sulphot... 26 8.8
AL021503-9|CAA16417.2| 572|Caenorhabditis elegans Hypothetical ... 26 8.8
AC006762-6|ABJ99063.1| 547|Caenorhabditis elegans Hypothetical ... 26 8.8
AC006762-5|AAF60553.2| 684|Caenorhabditis elegans Hypothetical ... 26 8.8
AB038044-1|BAB62394.1| 852|Caenorhabditis elegans N-deacetylase... 26 8.8
AB037943-1|BAB61758.1| 696|Caenorhabditis elegans N-deacetylase... 26 8.8
AB037942-1|BAB61757.1| 814|Caenorhabditis elegans N-deacetylase... 26 8.8
AB037941-1|BAB61756.1| 826|Caenorhabditis elegans N-deactylase/... 26 8.8
>AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 19 protein.
Length = 198
Score = 172 bits (418), Expect = 9e-44
Identities = 75/125 (60%), Positives = 96/125 (76%)
Frame = +3
Query: 27 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 206
MS+L+LQKRLA++V++CGK +VWLDPNE++EI+ NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1 MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60
Query: 207 ARVRKNTEARXKGRHCGFGKRRGTANARMPXKELWXXXXXXXXXXXXXYXTAKKIDRHLY 386
R R+ EAR KGRH G+GKRRGTANARMP K LW Y AKK+D+HLY
Sbjct: 61 FRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLY 120
Query: 387 HSLYM 401
H LY+
Sbjct: 121 HELYL 125
>Z35604-5|CAA84680.2| 269|Caenorhabditis elegans Hypothetical
protein ZK1058.5 protein.
Length = 269
Score = 29.5 bits (63), Expect = 0.94
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 135 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARXKGR 248
S +N+RKMIK G V+ + ++ A +R EAR R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208
>Z81508-5|CAB04138.1| 357|Caenorhabditis elegans Hypothetical
protein F20E11.7 protein.
Length = 357
Score = 26.6 bits (56), Expect = 6.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 51 RLAASVMRCGKKKVWLDPNEI 113
++A + + CG K+W DPN I
Sbjct: 171 QIAETSVTCGDDKIWQDPNGI 191
>Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical
protein C25A1.7 protein.
Length = 970
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 147 IRKMIKDGLVIKKPVAVHSRARVRKNTEARXKGRHCGFGKRRGTANARMP 296
I K++KD V+K +A+ R R + GK++G A +R P
Sbjct: 108 INKILKD-FVVKSRIALGYRVLFRPGWDCHGLPIELKIGKQQGNAGSRTP 156
>U42835-1|AAA83585.1| 87|Caenorhabditis elegans Hypothetical
protein C04F6.2 protein.
Length = 87
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -1
Query: 241 FXRASVFLRTRAREWTATGFLMTRPSLIILRMFCLELVFAISLISFGSN 95
F +VFL + + +L +P+L+ F ++L I L+ FG N
Sbjct: 32 FPGTNVFLYLKHKASKTFAYLSGKPALMNFISFVVQLACCIFLLDFGVN 80
>AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRNA
synthetase (mitochondrial)protein.
Length = 972
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 147 IRKMIKDGLVIKKPVAVHSRARVRKNTEARXKGRHCGFGKRRGTANARMP 296
I K++KD V+K +A+ R R + GK++G A +R P
Sbjct: 108 INKILKD-FVVKSRIALGYRVLFRPGWDCHGLPIELKIGKQQGNAGSRTP 156
>U52002-7|AAB37730.3| 715|Caenorhabditis elegans Heparan
sulphotransferase protein 1 protein.
Length = 715
Score = 26.2 bits (55), Expect = 8.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 206 RPCPQKHRGTXKGSSLWLW*EKR 274
+P Q R KGSSLW+W +R
Sbjct: 27 KPNDQLKRIKIKGSSLWMWQNQR 49
>AL021503-9|CAA16417.2| 572|Caenorhabditis elegans Hypothetical
protein Y68A4A.5 protein.
Length = 572
Score = 26.2 bits (55), Expect = 8.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 45 QKRLAASVMRCGKKKVWLDPNEI 113
Q ++A + + CG +W DPN I
Sbjct: 321 QAQIAETSVTCGSDAIWQDPNGI 343
>AC006762-6|ABJ99063.1| 547|Caenorhabditis elegans Hypothetical
protein Y42G9A.6b protein.
Length = 547
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = -1
Query: 247 RPFXRASVFLRTRAREWTATGFLMTRPSLIILRMFCLELVFAISLISFGSN 95
RP AS F + RA W A+ ++ P+L+ ++ F ++ ++ + + +N
Sbjct: 262 RPRFGASFFQQIRALTWRASKTVLREPTLLKVQTFQSIIIAILTGLVYTNN 312
>AC006762-5|AAF60553.2| 684|Caenorhabditis elegans Hypothetical
protein Y42G9A.6a protein.
Length = 684
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = -1
Query: 247 RPFXRASVFLRTRAREWTATGFLMTRPSLIILRMFCLELVFAISLISFGSN 95
RP AS F + RA W A+ ++ P+L+ ++ F ++ ++ + + +N
Sbjct: 399 RPRFGASFFQQIRALTWRASKTVLREPTLLKVQTFQSIIIAILTGLVYTNN 449
>AB038044-1|BAB62394.1| 852|Caenorhabditis elegans
N-deacetylase/N-sulfotransferase protein.
Length = 852
Score = 26.2 bits (55), Expect = 8.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 206 RPCPQKHRGTXKGSSLWLW*EKR 274
+P Q R KGSSLW+W +R
Sbjct: 164 KPNDQLKRIKIKGSSLWMWQNQR 186
>AB037943-1|BAB61758.1| 696|Caenorhabditis elegans
N-deacetylase/N-sulfotransferase protein.
Length = 696
Score = 26.2 bits (55), Expect = 8.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 206 RPCPQKHRGTXKGSSLWLW*EKR 274
+P Q R KGSSLW+W +R
Sbjct: 8 KPNDQLKRIKIKGSSLWMWQNQR 30
>AB037942-1|BAB61757.1| 814|Caenorhabditis elegans
N-deacetylase/N-sulfotransferase protein.
Length = 814
Score = 26.2 bits (55), Expect = 8.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 206 RPCPQKHRGTXKGSSLWLW*EKR 274
+P Q R KGSSLW+W +R
Sbjct: 126 KPNDQLKRIKIKGSSLWMWQNQR 148
>AB037941-1|BAB61756.1| 826|Caenorhabditis elegans
N-deactylase/N-sulfotransferase protein.
Length = 826
Score = 26.2 bits (55), Expect = 8.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 206 RPCPQKHRGTXKGSSLWLW*EKR 274
+P Q R KGSSLW+W +R
Sbjct: 138 KPNDQLKRIKIKGSSLWMWQNQR 160
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,569,829
Number of Sequences: 27780
Number of extensions: 190361
Number of successful extensions: 500
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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