Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H14
         (403 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   0.99 
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               21   6.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   9.2  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 0.99
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 23  QDEFPQAAEEACSLCYAMW*KEG 91
           +DEF +  +  CSLC   + ++G
Sbjct: 263 EDEFDEFGDSKCSLCQRRFEEQG 285


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 382 RCLSIFLAVXYFRSNFLRTLCLC 314
           RC+ +FL+V    S F+  +  C
Sbjct: 6   RCIYLFLSVILITSYFVTPVMPC 28


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 121 ISLISFGSNHTFFLPHRITEAASLFCSLRELILTAVRSN 5
           + +IS   +  FFL   + EAA  F ++ +  L   R N
Sbjct: 446 VVVISNDKSTEFFLATVVEEAACRFSAVAQAQLGGERQN 484


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 349 FRSNFLRTLCLC 314
           FR  F+R LC C
Sbjct: 397 FRRAFVRILCAC 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,647
Number of Sequences: 438
Number of extensions: 2546
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)