Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_H10
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 31 0.11
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 31 0.14
SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 31 0.14
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 29 0.77
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 29 0.77
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha... 28 1.3
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 27 2.3
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 27 3.1
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 26 5.4
SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces pombe... 25 7.2
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 25 7.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 7.2
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 9.5
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 9.5
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 31.5 bits (68), Expect = 0.11
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Frame = +2
Query: 203 SSIEEFSRAEEEVRHLXLLKKA----GLTTDEIKLYQENECGKLNQQNK-VETGVLKQKL 367
S + + R+E E+R L LL + G T + ++ E KL+ + K +
Sbjct: 714 SHVTQIQRSEVELRELYLLINSDSFQGSTNSKERII-EYLLDKLDLRKKEIAAESTLWSN 772
Query: 368 HYIYTRIQNLKEQVKQQNNQPSTSKTDVSI--KNLERNIPKNTY 493
I ++++L+EQ+ +Q++QPST T + I K R P++ +
Sbjct: 773 DGIDDKLRDLREQMSRQSSQPSTVSTILQIPDKKFHRPFPRHLH 816
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 31.1 bits (67), Expect = 0.14
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +2
Query: 269 GLTTDEIKLYQENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQPSTSKTD 448
G+ + IK E E L +E+GV K + HY+ TRIQ K Q +N+ S +
Sbjct: 711 GMANNAIK-NDEQELQMLKDLGNLESGV-KDRAHYLTTRIQ--KNQGVITDNEKSIERLT 766
Query: 449 VSIKNLE 469
++K ++
Sbjct: 767 EALKKID 773
>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
potassium ion transport|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 31.1 bits (67), Expect = 0.14
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = +2
Query: 290 KLYQENECGKLNQQ--NKVETGVLKQKLHYIYTRIQNLKEQV----KQQNNQPSTSKTDV 451
+LY E +Q NK +L+++ I +++ E KQ +TSK V
Sbjct: 411 ELYHETVVDMPTKQVSNKERLEILREQEELIEEEAEHVAEHPDLAKKQTEENKATSKPAV 470
Query: 452 SIKNLERNIPKN 487
S K+ E NIPKN
Sbjct: 471 SAKSPESNIPKN 482
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 28.7 bits (61), Expect = 0.77
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 257 LKKAGLTTDEIK--LYQENECGKLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQP 430
L K GL DE L ++N N ++ V++ LKQ L +I LK++ + P
Sbjct: 513 LVKPGLGVDEALAVLAKQNNLTDTNLKDAVDS--LKQSLSFINLDASALKDREPSEKELP 570
Query: 431 STSK 442
ST+K
Sbjct: 571 STAK 574
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.7 bits (61), Expect = 0.77
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 386 IQNLKEQVKQQNNQPSTSKTDVSIKNLERNIPKNTYC-DGHP 508
IQN+ E+VK+ P + KT+ S K L + T C D +P
Sbjct: 23 IQNINEEVKRDIQNPLSYKTETSDKELCQTAACATSCSDWYP 64
>SPCC1322.14c |vtc4||vacuolar transporter chaperone
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 353 LKQKLHYIYTRIQNLKEQVKQQNNQPSTSKTDVS--IKNLERNIPK 484
L + Y Y LK+++K++N+Q S+ D S ++ LE+ + K
Sbjct: 11 LMYEYKYSYVNYDKLKKEIKRRNDQGGWSEEDESDFVELLEKELDK 56
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 258 SNXKCRTSSSARLNSSIEDNPYLVKGNTSDFFSN 157
SN +T SS R NSS ++P+ ++ D F N
Sbjct: 174 SNSLLQTESSLRPNSSFVNSPFFPLPSSDDLFLN 207
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 194 YGLSSIEEFSRAEEEVRHLXLLKKAGLTTDEIKLYQEN 307
YG + IEEF A E+ + + + DEI+ QE+
Sbjct: 331 YGKTMIEEFEEANEDFLEQKVNDGSAIKADEIRKPQES 368
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 353 LKQKLHYIYTRIQNLKEQVKQQNNQPSTSKTDVSIKNLERNIPKNTYCD 499
+ Q+LHY T +L +Q Q+ + + KN+ +N KN + +
Sbjct: 412 ISQELHYFKTVGWSLVDQWDQKLEEKEDATECFFYKNVSQNTAKNNFLE 460
>SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 193
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 149 PKEFEKKSEVLPFTKYG--LSSIEEFSRAEEEVRHLXLLKKA 268
P+ F++KS V G SS F++ EEE++ LLKKA
Sbjct: 34 PRGFQQKSLVSKNIHSGNSASSTSIFAKREEELQKDLLLKKA 75
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 317 KLNQQNKVETGVLKQKLHYIYTRIQNLKEQVKQQNNQP 430
KL++ K + +L QKL+ I R L+ +++ QP
Sbjct: 703 KLSENRKEQCKILTQKLYTIVFRCNELQSVLRECVTQP 740
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 7.2
Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Frame = +2
Query: 200 LSSIEEFSR-AEEEVRHLXL-LKKAGLTTDEIKLYQENECGKLNQQNKVETGVLKQKLHY 373
+ S+EE ++E+ L L+ L T+++K N+ LNQ+ +++ VLK+K
Sbjct: 1364 IHSLEEGKEETKKEIAELSSRLEDNQLATNKLK----NQLDHLNQEIRLKEDVLKEKESL 1419
Query: 374 IYTRIQNLKEQVKQQNN 424
I + ++L Q +++++
Sbjct: 1420 IISLEESLSNQRQKESS 1436
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +2
Query: 386 IQNLKEQVKQQNNQPSTSKTDVSIKNLERNI 478
+ NL+EQ+K+Q + + T S+++L+R+I
Sbjct: 492 LNNLREQIKEQ--KKVSESTQSSLQSLQRDI 520
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -3
Query: 321 NLPHSFS*YSLISSVVKPAFFSNXKCRTSSSARLNSSIEDNPYLVKGNTSDFF 163
NLP+ S+ +S P F N + ++ + RLN+S E+ P+ K + F
Sbjct: 11 NLPNLIHSESITNS---PVFIPNLRSKSDNKHRLNTS-EELPFTKKRRATKHF 59
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +2
Query: 359 QKLHYIYTRIQNLKEQVKQQNNQPSTSKTD 448
++ H+I R++ L + + PS S+TD
Sbjct: 897 KRSHFIRERVKQLLSDANKHHQSPSDSETD 926
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,006
Number of Sequences: 5004
Number of extensions: 38564
Number of successful extensions: 136
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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