Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H09
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   139   1e-34
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   136   1e-33
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   0.29 
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    28   0.38 
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    28   0.50 
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    24   8.2  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    24   8.2  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  139 bits (337), Expect = 1e-34
 Identities = 62/90 (68%), Positives = 74/90 (82%)
 Frame = +1

Query: 4   GRAKHGRGHVKAVXCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLY 183
           GR KHGRGHVK V C NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY  + +PKLY
Sbjct: 9   GRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIPKLY 68

Query: 184 AKLHYCVSCAIHSKVVXNRSXKDRRIRTPP 273
            KL YCVSCAIHS+VV  RS + RRIRTPP
Sbjct: 69  IKLQYCVSCAIHSRVVRVRSREGRRIRTPP 98


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  136 bits (328), Expect = 1e-33
 Identities = 64/109 (58%), Positives = 81/109 (74%), Gaps = 3/109 (2%)
 Frame = +1

Query: 4   GRAKHGRGHVKAVXCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLY 183
           GR KHGRGH K V C NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY  + +PK+Y
Sbjct: 9   GRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIY 68

Query: 184 AKLHYCVSCAIHSKVVXNRSXKDRRIRTPPXS-NFPRDMSR--PQAVQR 321
            KL YCVSCAIH++VV  RS + RRIRTPP    + RD  R  P A+ +
Sbjct: 69  VKLQYCVSCAIHARVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 0.29
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 61  RCVPKDKAIKKFVIRNIVEAAAVRDI 138
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 28.3 bits (60), Expect = 0.38
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -1

Query: 120 RFYDVPNHELFDSLVLWHAPRAVCAXHSFNVTTSMLGASS 1
           + +DV + +L + + L   P+A+C  +S ++ TS++  SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 0.50
 Identities = 13/58 (22%), Positives = 28/58 (48%)
 Frame = +1

Query: 100 IRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVXNRSXKDRRIRTPP 273
           + N ++ +   D N+  +Y   +L K+Y  +    SC +H+ ++ N   + R+    P
Sbjct: 34  LSNSLDLSKTPDYNNVQLYGFIRL-KIYKYVVLVTSCDLHAAILGNNIYRARKFAIFP 90


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 126 RRRFYDVPNHELFDSLVLWHAPRA 55
           R  F +V N  L +S+ ++H PRA
Sbjct: 363 RNAFLNVANKYLPNSVCIYHVPRA 386


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 55   CARCVPKDKAIKKFVIRNIVEAAAVRDINDAS 150
            C R  P  KA+    +RN +E A    I D +
Sbjct: 1214 CCRSSPMQKALMVQKVRNTLEKAVTLAIGDGA 1245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,250,916
Number of Sequences: 5004
Number of extensions: 19306
Number of successful extensions: 37
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)