Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H09
         (360 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...   137   3e-33
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486...    27   5.9  
12_02_1116 + 26189651-26190544                                         26   7.7  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score =  137 bits (331), Expect = 3e-33
 Identities = 61/103 (59%), Positives = 79/103 (76%)
 Frame = +1

Query: 1   GGRAKHGRGHVKAVXCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKL 180
           GGR KHGRGHVK + C+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+  + LPKL
Sbjct: 8   GGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKL 67

Query: 181 YAKLHYCVSCAIHSKVVXNRSXKDRRIRTPPXSNFPRDMSRPQ 309
           YAK+H+CVSCAIH+ +V  RS ++RR R PP   F R +  P+
Sbjct: 68  YAKVHHCVSCAIHAHIVRVRSRENRRDRRPP-ERFRRRVPDPR 109


>05_01_0554 +
           4856131-4856605,4858051-4858098,4860611-4860792,
           4861409-4863136
          Length = 810

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 129 DRRRFYDVPNHELFD 85
           DR  FYD PN+E FD
Sbjct: 354 DRTLFYDEPNYEAFD 368


>12_02_1116 + 26189651-26190544
          Length = 297

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 217 HSKVVXNRSXKDRRIR 264
           HSKVV +R  +DRR+R
Sbjct: 50  HSKVVTSRGLRDRRVR 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,845,466
Number of Sequences: 37544
Number of extensions: 148738
Number of successful extensions: 312
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)