Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_H08
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 29 0.42
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.73
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 28 0.96
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 28 1.3
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 27 2.2
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces... 26 5.1
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 26 5.1
SPAC212.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.0
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 25 9.0
SPBCPT2R1.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.0
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 29.5 bits (63), Expect = 0.42
Identities = 23/80 (28%), Positives = 38/80 (47%)
Frame = +2
Query: 248 FGYKLLLKMMEQNENENIALSPTGIAGLLAMTLLGSVGSTYDELATSLGFSQDILANRNH 427
+G ++KM+ + NE ++PTG GL LG + + ++L + IL +R H
Sbjct: 666 YGKADVIKMLAKRCNEKWTIAPTGEIGL----YLGDIQDHLVTMTSNLSQFEKIL-SRTH 720
Query: 428 HEQFGELLQQLNDNETNSKT 487
+L N E NS+T
Sbjct: 721 SNYLAQLTS--NSIEENSRT 738
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 28.7 bits (61), Expect = 0.73
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -1
Query: 261 NLYPKLLTESAK*FG*N*ASEEFAFVVTPSIVLHHVPMISLQHRKNW 121
NL+P L + K FG + A+ ++A +TP + H M + + KNW
Sbjct: 1522 NLFPTLDSSPNKKFGRHLATFKYALELTPLFISH---MYNYKTNKNW 1565
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 28.3 bits (60), Expect = 0.96
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -3
Query: 184 CYSVHSVTPCSDDKF--TAQKEL-DFSSHFRPQYNLNLHKNNIG 62
C +H+V SD+ F TAQ+ L DF S P +L LH N +G
Sbjct: 93 CPKLHTVR-LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 332 LAMTLLGSVGSTYDELATSLG---FSQDILANRN 424
L +T +GSV YD L T++G F QD + +N
Sbjct: 708 LRLTKVGSVQQAYDVLTTAMGAILFDQDTIKRQN 741
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 27.1 bits (57), Expect = 2.2
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = +2
Query: 344 LLGSVGSTYDELATSLGFSQDILANRNHHEQFGELLQQLNDNETNSKTLYVDAMFVDSQT 523
L+ S S + E +ILA E FG NDN + Y+ +F + T
Sbjct: 190 LIQSTDSNFHEAPQLTAVENEILATNPIMEAFGNSKTSRNDNSSRFGK-YIQILFDGNAT 248
Query: 524 RIRSVFKDYL 553
I + + YL
Sbjct: 249 IIGAKIQTYL 258
>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 684
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +2
Query: 149 IGTWCNTMDGVTTKANSSEAQFQPNYLADSVNNFGYKLLLKMMEQNENEN 298
+ T+ N + + S ++ N+L S NN+ +++ K+ N N+N
Sbjct: 377 VRTYENYLVRTDPRERSIKSMLSDNFLQRSSNNYDNEIIEKVDSANSNKN 426
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 5.1
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 518 VNQQTWHLRIMFWSSFHYHSIVEAAHQTARGGFD 417
VN+ T +L FW HY S + A Q A GFD
Sbjct: 277 VNRVTPYLE-RFWFKCHYGSKLGTALQVAGPGFD 309
>SPAC212.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -1
Query: 540 KTDRIRV-CESTNMASTYN 487
K DR C STNMASTY+
Sbjct: 75 KRDRYTTQCHSTNMASTYD 93
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 25.0 bits (52), Expect = 9.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 351 VVWEVHTTSSPQASVFLKTY 410
++W++H S+ AS FL Y
Sbjct: 972 IIWQIHQGSASCASTFLSIY 991
>SPBCPT2R1.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 119
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -1
Query: 540 KTDRIRV-CESTNMASTYN 487
K DR C STNMASTY+
Sbjct: 75 KRDRYTTQCHSTNMASTYD 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,629
Number of Sequences: 5004
Number of extensions: 57987
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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