Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_H08
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 41 7e-04
03_05_0294 + 22855503-22855946,22856346-22856399 40 0.002
11_02_0012 - 7346282-7347136,7347234-7347593 35 0.061
11_02_0011 - 7337618-7338496,7338596-7338991 33 0.25
01_06_0824 - 32243495-32244319,32244449-32244859 32 0.43
11_01_0771 + 6453130-6454488 31 0.75
11_02_0118 - 8486986-8488925,8488971-8489041,8489884-8490728 30 1.7
06_01_0383 - 2749030-2750160,2752418-2752488,2753470-2753791 29 3.0
11_02_0014 - 7352619-7352918,7353173-7353418 29 4.0
08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899 28 5.3
07_03_0265 + 15976331-15976645,15977575-15977784,15977869-159779... 27 9.2
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 41.1 bits (92), Expect = 7e-04
Identities = 25/102 (24%), Positives = 43/102 (42%)
Frame = +2
Query: 296 NIALSPTGIAGLLAMTLLGSVGSTYDELATSLGFSQDILANRNHHEQFGELLQQLNDNET 475
N+A SP + L++ G+ G+T D+LA++LG EQ +L+
Sbjct: 36 NVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAFAEQLVQLVLADASGAG 95
Query: 476 NSKTLYVDAMFVDSQTRIRSVFKDYLTTVYHGGSPRCHFTQK 601
+ + D +FVD+ ++ F D Y + F K
Sbjct: 96 GPRVAFADGVFVDASLSLKKTFGDVAVGKYKAETHSVDFQTK 137
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 39.5 bits (88), Expect = 0.002
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Frame = +2
Query: 296 NIALSPTGIAGLLAMTLLGSVGSTYDELATSLGFSQDILANRNH--HEQFGELLQQLNDN 469
N+A SP + L++ G+ G+T D+L + LG A H EQ +L+ +
Sbjct: 45 NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGTAEGLHAFAEQVVQLVLADSSP 104
Query: 470 ETNSKTLYVDAMFVDSQTRIRSVFKDYLTTVYHGGSPRCHFTQK 601
+ + D +F+DS + FKD Y + F K
Sbjct: 105 AGGPRVAFADGVFIDSSLSLMKSFKDVAVGKYKAETHSVDFQTK 148
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 34.7 bits (76), Expect = 0.061
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 284 NENENIALSPTGIAGLLAMTLLGSVGSTYDELATSLG 394
N N N+ SP + LA+ G+ G+T DEL LG
Sbjct: 28 NSNRNVVFSPVSLYAALALVASGARGTTLDELVALLG 64
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 284 NENENIALSPTGIAGLLAMTLLGSVGSTYDELATSLG 394
+ N+N+ SP + LA+ G+ G+T DEL LG
Sbjct: 28 SSNKNLVFSPASLYAALALVAAGARGTTLDELLALLG 64
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 31.9 bits (69), Expect = 0.43
Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Frame = +2
Query: 290 NENIALSPTGIAGLLAMTLLGSVGSTYDELATSLG-FSQDILANRNHHEQFGELLQQL-- 460
++N+A+SP + LA+ G+ G T D++ LG A H L
Sbjct: 31 DKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGP 90
Query: 461 NDNETNSKTLYVDAMFVDSQTRIRSVFKDYLTTVYHGGSPRCHFTQK-NEXKQMIN 625
D+ K + + ++VD+ R+++ + + Y + F K E ++ IN
Sbjct: 91 GDDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREIN 146
>11_01_0771 + 6453130-6454488
Length = 452
Score = 31.1 bits (67), Expect = 0.75
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 296 NIALSPTGIAGLLAMTLLGSVGSTYDELATSLG-FSQDILA 415
N+A SP + L++ G+ G T DE+ LG S+D LA
Sbjct: 38 NLAFSPLSVHAALSLAAAGAAGGTLDEILAVLGAASRDDLA 78
>11_02_0118 - 8486986-8488925,8488971-8489041,8489884-8490728
Length = 951
Score = 29.9 bits (64), Expect = 1.7
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Frame = +3
Query: 153 EHGVTLWTE*QQKQILQRLNFNQIIWQTQSTILGTNYF---*K*WSKTRMKTSHCLRP-V 320
EH W E Q L+ L+ Q+I + + T+ G YF WS +T C P +
Sbjct: 247 EHASLAWDEEQLMGRLRALDEEQLINKLRETLTGRRYFIVIDDLWSTLAWRTIRCAFPEI 306
Query: 321 LLDYWQ*HFSVVWEVHTTSSPQAS-VFLKTYWPIETTTSSLVSCFNN*MIMK 473
+ V+E+ S+ A+ +F+K + E S + +N ++ K
Sbjct: 307 AKSCCYPDLNNVYELKPLSNSDANKLFMKRIFGSEDQCPSQLKLVSNGILRK 358
>06_01_0383 - 2749030-2750160,2752418-2752488,2753470-2753791
Length = 507
Score = 29.1 bits (62), Expect = 3.0
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Frame = +2
Query: 224 YLADSVNNFGYKLLLKMMEQNENENIALSPTGIAGLLAMTLLGSVGSTYD--ELATSLGF 397
YLA FG + QN + +AL G+ ++A L ++ + + E+++
Sbjct: 211 YLASQ--GFGTYSFVNESVQNIRDAMALCIGGLTSIVAQDLEVTIRAAHPGVEISSVDSG 268
Query: 398 SQDILANRNHHEQFGELLQQLNDNETNSKTLYVDAMFVDSQTRIRSVFKDYLTTV 562
D+L + N H+ + L D E N +YV+A + ++ + L TV
Sbjct: 269 CHDVLLSSNKHKSIVHIKDLLGDEERN-LIVYVNAPDQEEHGQLATASMAKLLTV 322
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +2
Query: 233 DSVNNFGYKLLLKMMEQ----NENENIALSPTGIAGLLAMTLLGSVGSTYDELATSLGFS 400
D + F +L ++ + N N N+ S + LA+ G G+T EL LG S
Sbjct: 9 DGMTAFALRLAKRLADNGDDVNNNRNLVFSLVSLYAALALVAAGGQGTTLHELLALLGAS 68
>08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899
Length = 712
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -2
Query: 371 RMYFPHYREVSLPVIQQYRSETMRCFHSRFAPSFLKVICTQNC*LSLPN 225
R+YFP Y + PV +T ++PSF VI NC +PN
Sbjct: 661 RIYFPRYSKDGKPVFYDMNKKT-------YSPSFYGVIEPLNCVWVVPN 702
>07_03_0265 +
15976331-15976645,15977575-15977784,15977869-15977916,
15978307-15978675,15978736-15978747,15978763-15978870,
15979156-15979493,15980313-15980430,15983247-15984107,
15984457-15984750
Length = 890
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 407 ILANRNHHEQFGELLQQLNDNETNSKTLYVDAMFVDSQTRIRSVF 541
IL ++N+H+ FG + +L+ NS T+ + + S+ RI S F
Sbjct: 612 ILGSKNYHDVFGRWMHKLSMKSPNSVTIKLTSA---SRYRIPSCF 653
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,273,082
Number of Sequences: 37544
Number of extensions: 359633
Number of successful extensions: 921
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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