Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_H08
(627 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY525079-1|AAS13528.1| 359|Caenorhabditis elegans serine or cys... 46 2e-05
AF026209-15|AAB71270.1| 359|Caenorhabditis elegans Serpin prote... 46 2e-05
U97008-19|AAB52318.2| 375|Caenorhabditis elegans Serpin protein... 36 0.018
AY525082-1|AAS13530.1| 375|Caenorhabditis elegans serine or cys... 36 0.018
Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical pr... 29 2.7
U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein. 29 2.7
Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical p... 28 4.8
Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical pr... 28 4.8
AL132847-2|CAB63372.1| 343|Caenorhabditis elegans Hypothetical ... 28 6.3
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr... 27 8.3
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ... 27 8.3
>AY525079-1|AAS13528.1| 359|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 359
Score = 46.0 bits (104), Expect = 2e-05
Identities = 33/132 (25%), Positives = 59/132 (44%)
Frame = +2
Query: 230 ADSVNNFGYKLLLKMMEQNENENIALSPTGIAGLLAMTLLGSVGSTYDELATSLGFSQDI 409
A S +F KLL + ++ LSP I+ LA+ G+ GST EL +D+
Sbjct: 5 ATSQTDFALKLLATLPHSG---SVVLSPLSISLGLALIHAGACGSTQKEL-------EDV 54
Query: 410 LANRNHHEQFGELLQQLNDNETNSKTLYVDAMFVDSQTRIRSVFKDYLTTVYHGGSPRCH 589
L E+F L++ + D + +T V+ +FV+ I + + + +Y
Sbjct: 55 LGGSRIFEEFSGLMEAVGDTDNGVETKIVNRVFVNQAYTIHQDYLETVEKLYKASGESLD 114
Query: 590 FTQKNEXKQMIN 625
F+Q + + +N
Sbjct: 115 FSQTEQAAKTMN 126
>AF026209-15|AAB71270.1| 359|Caenorhabditis elegans Serpin protein
2 protein.
Length = 359
Score = 46.0 bits (104), Expect = 2e-05
Identities = 33/132 (25%), Positives = 59/132 (44%)
Frame = +2
Query: 230 ADSVNNFGYKLLLKMMEQNENENIALSPTGIAGLLAMTLLGSVGSTYDELATSLGFSQDI 409
A S +F KLL + ++ LSP I+ LA+ G+ GST EL +D+
Sbjct: 5 ATSQTDFALKLLATLPHSG---SVVLSPLSISLGLALIHAGACGSTQKEL-------EDV 54
Query: 410 LANRNHHEQFGELLQQLNDNETNSKTLYVDAMFVDSQTRIRSVFKDYLTTVYHGGSPRCH 589
L E+F L++ + D + +T V+ +FV+ I + + + +Y
Sbjct: 55 LGGSRIFEEFSGLMEAVGDTDNGVETKIVNRVFVNQAYTIHQDYLETVEKLYKASGESLD 114
Query: 590 FTQKNEXKQMIN 625
F+Q + + +N
Sbjct: 115 FSQTEQAAKTMN 126
>U97008-19|AAB52318.2| 375|Caenorhabditis elegans Serpin protein 6
protein.
Length = 375
Score = 36.3 bits (80), Expect = 0.018
Identities = 30/144 (20%), Positives = 62/144 (43%)
Frame = +2
Query: 194 NSSEAQFQPNYLADSVNNFGYKLLLKMMEQNENENIALSPTGIAGLLAMTLLGSVGSTYD 373
+ S + + L S +FG LL +QN E+ SP IA L++ + + G T D
Sbjct: 2 SDSSSDEKMGLLLHSETDFGLSLL---RQQNLTESFVFSPLSIALALSLVHVAAKGETRD 58
Query: 374 ELATSLGFSQDILANRNHHEQFGELLQQLNDNETNSKTLYVDAMFVDSQTRIRSVFKDYL 553
E+ +L + + + F + L E ++ + +F I+ ++ + +
Sbjct: 59 EIRKAL---LNGATDEELEQHFSNISAGLLVAEKGTEVNVANHIFSRKTFTIKKLYLNDV 115
Query: 554 TTVYHGGSPRCHFTQKNEXKQMIN 625
+Y+ G+ + +F + + IN
Sbjct: 116 KKLYNAGASQLNFEDQEASAEAIN 139
>AY525082-1|AAS13530.1| 375|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 375
Score = 36.3 bits (80), Expect = 0.018
Identities = 30/144 (20%), Positives = 62/144 (43%)
Frame = +2
Query: 194 NSSEAQFQPNYLADSVNNFGYKLLLKMMEQNENENIALSPTGIAGLLAMTLLGSVGSTYD 373
+ S + + L S +FG LL +QN E+ SP IA L++ + + G T D
Sbjct: 2 SDSSSDEKMGLLLHSETDFGLSLL---RQQNLTESFVFSPLSIALALSLVHVAAKGETRD 58
Query: 374 ELATSLGFSQDILANRNHHEQFGELLQQLNDNETNSKTLYVDAMFVDSQTRIRSVFKDYL 553
E+ +L + + + F + L E ++ + +F I+ ++ + +
Sbjct: 59 EIRKAL---LNGATDEELEQHFSNISAGLLVAEKGTEVNVANHIFSRKTFTIKKLYLNDV 115
Query: 554 TTVYHGGSPRCHFTQKNEXKQMIN 625
+Y+ G+ + +F + + IN
Sbjct: 116 KKLYNAGASQLNFEDQEASAEAIN 139
>Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical
protein E02H4.1 protein.
Length = 664
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = -3
Query: 229 QIIWLKLSL*RICFCCYSVHSVTPCSDDK-FTAQKELDFSSHFRPQY---NLNLHKNNIG 62
+ +W+ +SL IC C YS V D K EL F S P NLN KN++
Sbjct: 67 RFLWVVVSLVCICLCMYSFSHVKDKYDRKEKIVNVELVFESAPFPAITVCNLNPFKNHLA 126
Query: 61 RA 56
R+
Sbjct: 127 RS 128
>U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein.
Length = 664
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = -3
Query: 229 QIIWLKLSL*RICFCCYSVHSVTPCSDDK-FTAQKELDFSSHFRPQY---NLNLHKNNIG 62
+ +W+ +SL IC C YS V D K EL F S P NLN KN++
Sbjct: 67 RFLWVVVSLVCICLCMYSFSHVKDKYDRKEKIVNVELVFESAPFPAITVCNLNPFKNHLA 126
Query: 61 RA 56
R+
Sbjct: 127 RS 128
>Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical
protein F23B2.12 protein.
Length = 1080
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 512 DSQTRIRSV--FKDYLTTVYHGGSPRCHFTQKNEXKQMIN 625
DS T + ++ F +Y+ Y+GG P +F N + MIN
Sbjct: 833 DSNTPLNNIVAFNEYMANFYNGGGP--YFGLDNSYQDMIN 870
>Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical
protein F23B2.12 protein.
Length = 1080
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 512 DSQTRIRSV--FKDYLTTVYHGGSPRCHFTQKNEXKQMIN 625
DS T + ++ F +Y+ Y+GG P +F N + MIN
Sbjct: 833 DSNTPLNNIVAFNEYMANFYNGGGP--YFGLDNSYQDMIN 870
>AL132847-2|CAB63372.1| 343|Caenorhabditis elegans Hypothetical
protein Y48G10A.3 protein.
Length = 343
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 167 TMDGVTTKANSSEAQFQPNYLADSVNNFGYKLLLKMMEQNENENIAL 307
TMDG+ S F+ N G +LL+ QN+N IAL
Sbjct: 107 TMDGIAKTIESVADHFKLNQFIGFGVGVGANVLLRYAAQNQNRVIAL 153
>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical protein
F54D1.5 protein.
Length = 1406
Score = 27.5 bits (58), Expect = 8.3
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = -2
Query: 365 YFPHYREVSLPVIQQYRSETMRCFHSRFAPSFLKVICTQNC*LSLPNNLVEI 210
YF Y EV I E +RCF F P L VI + L N L+ I
Sbjct: 1077 YFMLYGEVYAGEIDTCGDEGIRCFPGYFIPPLLMVIFLLVANILLLNLLIAI 1128
>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1122
Score = 27.5 bits (58), Expect = 8.3
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = -2
Query: 365 YFPHYREVSLPVIQQYRSETMRCFHSRFAPSFLKVICTQNC*LSLPNNLVEI 210
YF Y EV I E +RCF F P L VI + L N L+ I
Sbjct: 793 YFMLYGEVYAGEIDTCGDEGIRCFPGYFIPPLLMVIFLLVANILLLNLLIAI 844
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,153,369
Number of Sequences: 27780
Number of extensions: 331210
Number of successful extensions: 895
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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