Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H08
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   1.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.8  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 62  TNIIFVQIQIVLRSKMRRKIQFFLCCKLIIGTWCNTM 172
           T + F  I +++   +   I FF CC  I  + C T+
Sbjct: 46  TGLAFPSITLIVLGSIIFVISFFGCCGAIRESHCMTI 82


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -2

Query: 464 HSIVEAAHQTARGGFDWPICLEKNRGLWRARRMYFPHY 351
           ++I+  + Q      DWP   +  RG+  A R   P Y
Sbjct: 574 NTIIRNSQQAPGQSPDWPSTSQIQRGVNAAIRSQEPFY 611


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 624 FIICLXSFFCV 592
           F+IC   FFCV
Sbjct: 281 FLICWVPFFCV 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,963
Number of Sequences: 438
Number of extensions: 3950
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)