Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H06
         (355 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)                28   1.9  
SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)                28   2.5  
SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017)        28   2.5  
SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)                      27   3.3  
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.4  
SB_58559| Best HMM Match : AA_permease (HMM E-Value=1.5e-07)           26   7.7  
SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.7  

>SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)
          Length = 351

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 66  GASLRKMVKKMEVTQHAKYTCSFCGK 143
           G   +K ++  E++ H KY CS CGK
Sbjct: 210 GGVTKKQIQSNEIS-HKKYVCSTCGK 234


>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
          Length = 300

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 128 LILW*GCYETFL-CRHLVL*AMQEDCXXRSLGILHYCCLIMXICCQEV 268
           ++L  GCY   L C H+V   M   C    + +L   C++M ICC +V
Sbjct: 127 VVLSLGCYVVMLLCHHVV---MSLSCY---IDMLLCRCVVMSICCYDV 168


>SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017)
          Length = 893

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = -1

Query: 253 DXHDEAAVVENTQAPXXTVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSIFLT 86
           D H    V EN +    T    RL D +   +  +  +  +  VYF       FLT
Sbjct: 670 DKHSAEHVAENVKPSCKTGSTRRLLDTLVAMQLLVKEMDSDPPVYFNSQTAEAFLT 725


>SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 145 SLPQNEQVYFACWVTSIFLTIL 80
           S P +  V FA W  SIFLTI+
Sbjct: 133 SAPTSLSVIFAAWFLSIFLTII 154


>SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 36  GITGKYGTRYGASLRKMVKKMEVTQHAKYTC 128
           GIT    T Y +S +K+V +   T+ A  TC
Sbjct: 23  GITCMMSTHYSSSYKKLVPRQLTTRWASITC 53


>SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 163 QERFIASLPQNEQVYFACWVTSIFLTILRRE 71
           +++  AS  + E  ++ CWV S F+T  + +
Sbjct: 167 RKKIAASCWEKESEFYECWVASFFITTAKTQ 197


>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
          Length = 298

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 123 TCSFCGKDAMKRS 161
           TC+FCGKDA K S
Sbjct: 243 TCNFCGKDARKTS 255


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 4   FPKWPNVPKRLELLANMAHVTVPL 75
           FP  P VP R  +LAN+A V  PL
Sbjct: 281 FPSSPAVPTRRGILANLAKVYDPL 304


>SB_58559| Best HMM Match : AA_permease (HMM E-Value=1.5e-07)
          Length = 530

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = +1

Query: 4   FPKWPNVPKRLELLANMAHVTVPLYVKWSKRWK*PNTQSILAHFVVRML*NVLVSASGLV 183
           FP  P  P+ +++LA +  V V     WS +W     Q +  +   ++L   +++ +G+V
Sbjct: 216 FPDCPPPPEVVKILACVCLVVVTGVNCWSVKWA-TRVQDVFTY--AKLLCIAMLTITGIV 272

Query: 184 SDARG 198
              RG
Sbjct: 273 ELCRG 277


>SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 5   FQNGQTXQKGWNYWQIWHTLRCL 73
           +Q     + GW  WQIW  LR +
Sbjct: 646 YQGRPLMKYGWLKWQIWRALRLI 668


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,606,327
Number of Sequences: 59808
Number of extensions: 160612
Number of successful extensions: 462
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)