Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H05
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    79   5e-16
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    27   2.3  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    26   4.1  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.2  

>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 79.0 bits (186), Expect = 5e-16
 Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 17/192 (8%)
 Frame = +3

Query: 126 KVFNFGAGPAKLPEEVYEIIXNELTNFENSGISLLETSHRSSTYMKLNVEIXDVVRNLLX 305
           +V NF AGPA +   V E    +  NF+  G+ + E SHRS     +        R L  
Sbjct: 6   EVVNFAAGPAAMITSVVEEFGKDFVNFQGLGMGVAEISHRSKQGSGIVTSAESNFRKLYN 65

Query: 306 VPDNYKVXXXXXXXXXXXXXVPLNLISXTG---------TADYVXTGAWSAKAANEAKKY 458
           +P+N+ +                N+ +             A+Y+ TGAWS KA  EA++ 
Sbjct: 66  IPENFHILFMQGGGTEQFAACLYNVYAHHALKNGNAKSLVANYIITGAWSKKAYAEAERL 125

Query: 459 G-KVNLVLPPTD---KYEXIPDQT--KWNLDPNASYVHICTNETIHGVEFDFIPXT--KG 614
           G   ++ +   +   KY  +P+    K+  D   S V+ C NET+HGVEF+  P    KG
Sbjct: 126 GFPCHVAVDMKELAGKYGSLPEDKDLKFTPDGETSLVYYCDNETVHGVEFNEPPTNIPKG 185

Query: 615 VPLIAXMSSNIM 650
              +  +SSN +
Sbjct: 186 AIRVCDVSSNFI 197


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 165 EEVYEIIXNELTNFENSGISLLETSHRSSTYMKLNVEIXDVV 290
           E V  +  N + +   + ++LL T H S T  KLNV   D++
Sbjct: 604 ESVDSVTCNYVLSSSKNPMNLLFTLHNSITDGKLNVHCNDII 645


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 381 LSLKEQLQIDQDPHQLKTALCSCPVHXISFAQ 286
           L+LK+ + I  + H L  A+CS     ISF Q
Sbjct: 352 LTLKDNICIIDEAHNLIDAICSMHSSSISFRQ 383


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 189  NELTNFENSGISLLETSHRSSTYMKLNVEIXDVVRNLL 302
            N+ +      +SLL  S  S++Y  L +   D+V N+L
Sbjct: 1198 NQWSQVRALALSLLSDSLNSTSYRLLGISCSDMVSNIL 1235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,411
Number of Sequences: 5004
Number of extensions: 43269
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)