Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H05
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0398 + 3092577-3093857                                          118   3e-27
05_01_0114 + 770049-770286,771007-771605                               30   1.8  
03_02_0178 + 6195402-6199158,6199438-6200003                           29   2.4  

>03_01_0398 + 3092577-3093857
          Length = 426

 Score =  118 bits (285), Expect = 3e-27
 Identities = 70/176 (39%), Positives = 96/176 (54%), Gaps = 4/176 (2%)
 Frame = +3

Query: 129 VFNFGAGPAKLPEEVYEIIXNELTNFENSGISLLETSHRSSTYMKLNVEIXDVVRNLLXV 308
           V+NF AGPA LP  V +    EL ++  SG+S++E SHR   +     +    +R LL V
Sbjct: 65  VYNFAAGPATLPLSVLQRAQAELVDYRGSGMSIMEMSHRGKEFDAAIKKAEADLRALLAV 124

Query: 309 PDNYKVXXXXXXXXXXXXXVPLNL-ISXTGTADYVXTGAWSAKAANEAKKYGKVNLVLPP 485
           PD ++V              PLNL  S +  AD+V +G+WS KA  EAKK+   ++    
Sbjct: 125 PDTHEVLFLQGGATSQFAAAPLNLCASPSDPADFVVSGSWSDKAFKEAKKFSAASVAWSG 184

Query: 486 TD-KYEXIPDQTKWNLDPNASYVHICTNETIHGVEF-DF-IPXTKGVPLIAXMSSN 644
            D KY  +P       +P A ++HIC+NETIHGVEF D+  P  K   L+A MSSN
Sbjct: 185 KDGKYTSLPPFDAIEQNPEARFLHICSNETIHGVEFKDYPEPKNKSGILVADMSSN 240


>05_01_0114 + 770049-770286,771007-771605
          Length = 278

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +3

Query: 396 TADYVXTGAWSAKAANEAKK--YGKVNLVLPPTDKYEXIPDQTKWNLDPNASY 548
           T DY     W+  AA EA    Y    +  PP+  +E   D + W +D    Y
Sbjct: 218 TMDYTMDQLWNDIAAAEADTSCYDAAAMASPPSPVWEFCTDYSLWRIDDEEYY 270


>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 423 WSAKAANEAKKYGKVNLVLPPTDKYEXIPDQT 518
           W A+ +NE+ K  +   VL  T KY  +PD+T
Sbjct: 873 WQAQLSNESTKKREPTAVLQNTVKYGNLPDKT 904


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,231,272
Number of Sequences: 37544
Number of extensions: 243583
Number of successful extensions: 548
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)