Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H05
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30238| Best HMM Match : No HMM Matches (HMM E-Value=.)             102   3e-22
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_30238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score =  102 bits (244), Expect = 3e-22
 Identities = 42/65 (64%), Positives = 53/65 (81%)
 Frame = +3

Query: 393 GTADYVXTGAWSAKAANEAKKYGKVNLVLPPTDKYEXIPDQTKWNLDPNASYVHICTNET 572
           G+ADY+ TGAWSAKA  EA+KYGKVNLVLP T  Y+ IPD ++W L+P+ASYV+ C NET
Sbjct: 42  GSADYIVTGAWSAKAVKEAEKYGKVNLVLPKTSTYDSIPDPSQWTLNPDASYVYYCENET 101

Query: 573 IHGVE 587
           +H +E
Sbjct: 102 VHEME 106



 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 19/36 (52%), Positives = 23/36 (63%)
 Frame = +3

Query: 126 KVFNFGAGPAKLPEEVYEIIXNELTNFENSGISLLE 233
           KV NF  GPAKLPE V +    E  N+ N GIS++E
Sbjct: 5   KVINFAPGPAKLPEVVLKKAQEEFLNYGNLGISVME 40


>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1769

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 520 NGTLIPMLHMYIFVLMKQYMVLNLTSYXIRKE 615
           N  L+P LH YI   ++ +  L+ TSY I  +
Sbjct: 43  NKVLLPALHKYIAPKIQNHYALHKTSYNIHSQ 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,097,609
Number of Sequences: 59808
Number of extensions: 305639
Number of successful extensions: 559
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)