Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H05
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical pr...   159   2e-39
AF003150-1|AAB54215.1|  997|Caenorhabditis elegans Hypothetical ...    29   2.9  

>Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical
           protein F26H9.5 protein.
          Length = 370

 Score =  159 bits (385), Expect = 2e-39
 Identities = 78/173 (45%), Positives = 103/173 (59%), Gaps = 1/173 (0%)
 Frame = +3

Query: 135 NFGAGPAKLPEEVYEIIXNELTNFENSGISLLETSHRSSTYMKLNVEIXDVVRNLLXVPD 314
           NF AGPAKLPEEV   +  E  NF N G+S++E SHRS  +  L  E   ++R L+ VPD
Sbjct: 9   NFAAGPAKLPEEVLLKMQEEQLNFNNLGVSVIEMSHRSKEFGALLNETISLIRELMNVPD 68

Query: 315 NYKVXXXXXXXXXXXXXVPLNLISXTGTADYVXTGAWSAKAANEAKKYGKVNLVLPPTDK 494
           N+++             +PLNL      ADY+ TGAWS+KAA+EA KY  V  V  P+  
Sbjct: 69  NFEILFMQGGGTGQFAAIPLNLKGDHEHADYIVTGAWSSKAADEAGKYINVKKVFQPSKP 128

Query: 495 YEXIPDQTKWNLDPNASYVHICTNETIHGVEF-DFIPXTKGVPLIAXMSSNIM 650
           Y  +PDQ  W  D  A+Y++ C NET+HG+EF    P +  VPL+A +SSN M
Sbjct: 129 YVTVPDQENWVHDEKAAYLYYCANETVHGIEFTPTAPESHNVPLVADVSSNFM 181


>AF003150-1|AAB54215.1|  997|Caenorhabditis elegans Hypothetical
           protein T05E7.3 protein.
          Length = 997

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -2

Query: 158 FSRSSAKIKHFRHFHLFIYLINSYXTLFYQTTLSFSDVSRYDVVLS 21
           F+RSS +++      LFI + N   + F +++LS+ DV     VLS
Sbjct: 717 FARSSGELEKNYIAELFIKITNPKASRFSESSLSWKDVKMSKTVLS 762


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,964,392
Number of Sequences: 27780
Number of extensions: 240800
Number of successful extensions: 617
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)