Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H04
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              246   1e-65
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)          33   0.23 
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)          33   0.23 
SB_36174| Best HMM Match : Transposase_11 (HMM E-Value=0.00013)        28   6.5  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  246 bits (601), Expect = 1e-65
 Identities = 112/161 (69%), Positives = 131/161 (81%)
 Frame = +1

Query: 28  RVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAV 207
           +V + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP  V
Sbjct: 26  KVHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIV 85

Query: 208 HSRARVRKNTEARXKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXYRTAKKIDR 387
           HSRARVRK  EAR KGRH G GKR+GTANARMPQK +W             YR AKKID 
Sbjct: 86  HSRARVRKADEARSKGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDN 145

Query: 388 HLYHSLYMKAKGNVFKNKRVLMEYIHRXKADKAXTXMLSDQ 510
           H+YHSLYMK+KGNVFKNKRVLMEYIH+ KA+KA + +LSDQ
Sbjct: 146 HMYHSLYMKSKGNVFKNKRVLMEYIHKKKAEKARSKLLSDQ 186


>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
          Length = 351

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 19/60 (31%), Positives = 24/60 (40%)
 Frame = -2

Query: 559 PRGACVPPSLYCGGPQPGR*AXSSWPCQPXSCGCTP*AHACS*THYPSPSCRVSGIDACQ 380
           P G CV PS +C G          W C   SC      HAC+     + S   +G+  CQ
Sbjct: 82  PDGKCVHPSKFCNGESDCTDGSDEWSCD-NSCSS---RHACADGTCVTWSLTCNGVSDCQ 137


>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
          Length = 147

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 19/60 (31%), Positives = 24/60 (40%)
 Frame = -2

Query: 559 PRGACVPPSLYCGGPQPGR*AXSSWPCQPXSCGCTP*AHACS*THYPSPSCRVSGIDACQ 380
           P G CV PS +C G          W C   SC      HAC+     + S   +G+  CQ
Sbjct: 82  PDGKCVHPSKFCNGESDCTDGSDEWSCD-NSCSS---RHACADGTCVTWSLTCNGVSDCQ 137


>SB_36174| Best HMM Match : Transposase_11 (HMM E-Value=0.00013)
          Length = 427

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 72  GCKPLLQLEGTHPDTVRSNATQES 1
           GCKP L     HPDT +  A  E+
Sbjct: 336 GCKPFLMTPFPHPDTPKQEAYNEA 359


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,729,878
Number of Sequences: 59808
Number of extensions: 390066
Number of successful extensions: 923
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)