Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_H04
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   208   2e-54
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U42835-1|AAA83585.1|   87|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  208 bits (509), Expect = 2e-54
 Identities = 92/158 (58%), Positives = 120/158 (75%)
 Frame = +1

Query: 37  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 216
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 217 ARVRKNTEARXKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXYRTAKKIDRHLY 396
            R R+  EAR KGRH G+GKRRGTANARMP+K LW             YR AKK+D+HLY
Sbjct: 61  FRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLY 120

Query: 397 HSLYMKAKGNVFKNKRVLMEYIHRXKADKAXTXMLSDQ 510
           H LY++AKGN FKNK+ L+EYI + K +      L+DQ
Sbjct: 121 HELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 145 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARXKGR 258
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 583 PPXWRQYVPRGACVPP 536
           P  W QY P+G C+ P
Sbjct: 221 PNSWHQYQPKGTCIQP 236


>U42835-1|AAA83585.1|   87|Caenorhabditis elegans Hypothetical
           protein C04F6.2 protein.
          Length = 87

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 251 FXRASVFLRTRARECTATGFLMTRPSLIILRMFCLELVFAISLISFGSN 105
           F   +VFL  + +      +L  +P+L+    F ++L   I L+ FG N
Sbjct: 32  FPGTNVFLYLKHKASKTFAYLSGKPALMNFISFVVQLACCIFLLDFGVN 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,349,030
Number of Sequences: 27780
Number of extensions: 271564
Number of successful extensions: 656
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)