Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_G24
(527 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 306 2e-82
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 304 7e-82
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 162 7e-75
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 263 2e-69
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 233 2e-60
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 230 1e-59
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 167 1e-58
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 221 1e-56
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 206 3e-52
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 200 2e-50
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 190 2e-47
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 132 5e-30
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 112 4e-24
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 107 2e-22
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 105 5e-22
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 104 1e-21
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 99 5e-20
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 99 7e-20
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 98 1e-19
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 97 2e-19
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 96 4e-19
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 95 1e-18
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 92 6e-18
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 92 8e-18
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 91 1e-17
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 89 4e-17
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 89 8e-17
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 89 8e-17
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 85 1e-15
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 85 1e-15
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 73 4e-12
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 70 4e-11
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 69 5e-11
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 52 1e-05
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 38 0.14
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 38 0.19
UniRef50_A5BNN8 Cluster: Putative uncharacterized protein; n=1; ... 36 0.76
UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to Tyrosine-p... 33 4.1
UniRef50_Q22BQ8 Cluster: Putative uncharacterized protein; n=1; ... 33 5.4
UniRef50_Q9H7Y0 Cluster: Uncharacterized protein CXorf36 precurs... 33 5.4
UniRef50_UPI000058722D Cluster: PREDICTED: similar to Ehf protei... 32 7.1
UniRef50_A4Y015 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 32 7.1
UniRef50_A2DLM0 Cluster: Ser/Thr protein phosphatase, putative; ... 32 7.1
UniRef50_Q5FHB1 Cluster: High-affinity zinc uptake system protei... 32 9.4
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 306 bits (752), Expect = 2e-82
Identities = 139/175 (79%), Positives = 155/175 (88%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
PSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV QRL+KVDGKVRTDPTYPAG+MDV+
Sbjct: 31 PSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVI 90
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 361
++ KT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRTIRYP
Sbjct: 91 TLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYP 150
Query: 362 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRERHPGSF 526
DPLI NDS+Q+DIA+ KI D+IKF+SGNLCMITGGRNLGRVGT+V RERHPGSF
Sbjct: 151 DPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSF 205
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 304 bits (747), Expect = 7e-82
Identities = 136/175 (77%), Positives = 153/175 (87%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR IK+DGKVRTD TYPAGFMDV+
Sbjct: 31 PSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVI 90
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 361
SI KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTHD RTIRYP
Sbjct: 91 SIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYP 150
Query: 362 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRERHPGSF 526
DPLIKVND+IQ+D+ T KI DFIKF++GNLCM+TGG NLGR+G I RERHPGSF
Sbjct: 151 DPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSF 205
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 162 bits (393), Expect(2) = 7e-75
Identities = 75/90 (83%), Positives = 80/90 (88%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR IK+DGKVRTD TYP GFMDV+
Sbjct: 31 PSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPTGFMDVI 90
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAK 271
SI KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 91 SIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 141 bits (341), Expect(2) = 7e-75
Identities = 58/86 (67%), Positives = 73/86 (84%)
Frame = +2
Query: 269 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGN 448
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF++ N
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 449 LCMITGGRNLGRVGTIVXRERHPGSF 526
+CM+TGG NLGR+G I RERHPGSF
Sbjct: 212 MCMVTGGANLGRIGVITNRERHPGSF 237
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 263 bits (645), Expect = 2e-69
Identities = 121/175 (69%), Positives = 143/175 (81%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR I+VDGKVRTD TYPAGFMDVV
Sbjct: 31 PSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVV 90
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 361
SI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYP
Sbjct: 91 SIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYP 150
Query: 362 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRERHPGSF 526
DPLIK ND+I+LD+ KI++FIKF+ GN+ M+TGGRN GRVG I RE+H GSF
Sbjct: 151 DPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSF 205
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 233 bits (569), Expect = 2e-60
Identities = 103/175 (58%), Positives = 133/175 (76%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
PS GPH ++ECLPL++ LRNRL YAL G EV IVK R IK+DGK+RTD YP GFMDV+
Sbjct: 31 PSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKNRTIKIDGKIRTDTRYPVGFMDVL 90
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 361
SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDGRTIRYP
Sbjct: 91 SIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTIRYP 150
Query: 362 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRERHPGSF 526
P ++ ND+I+L++ T KI+DF+KF+ GN M+ GG +GRVG IV RE HPGSF
Sbjct: 151 HPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMGRVGVIVKREVHPGSF 205
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 230 bits (563), Expect = 1e-59
Identities = 110/175 (62%), Positives = 132/175 (75%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
PSTGPHKLRECLP IFLRNRLKYALTG+EV KI Q IKVDGK+RTD P MDV+
Sbjct: 42 PSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKICMQWFIKVDGKIRTDNNLPYWIMDVI 100
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 361
SI K E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV HD T+R+P
Sbjct: 101 SIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVIHDIHTVRHP 160
Query: 362 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRERHPGSF 526
D LIKVND+IQ+D+ T KI +KF++GNLC++TGG N GR+G I RERHP SF
Sbjct: 161 DSLIKVNDTIQIDLETGKI-TALKFDTGNLCLVTGGGNWGRIGVITNRERHPVSF 214
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 167 bits (406), Expect(2) = 1e-58
Identities = 71/102 (69%), Positives = 85/102 (83%)
Frame = +2
Query: 221 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 400
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 401 IATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRERHPGSF 526
+ T KI DF KF++GNLCM+TGG NLGR+G I RE HPGSF
Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIGVITNRENHPGSF 177
Score = 81.8 bits (193), Expect(2) = 1e-58
Identities = 37/45 (82%), Positives = 40/45 (88%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGK 136
PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI Q IK+DGK
Sbjct: 31 PSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRMQHFIKMDGK 75
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 221 bits (539), Expect = 1e-56
Identities = 99/175 (56%), Positives = 132/175 (75%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+RL+KVDGKVRT+ YP G MDV+
Sbjct: 45 PSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKRRLVKVDGKVRTNYRYPTGLMDVI 104
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 361
+ K+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTHDGRTI Y
Sbjct: 105 ELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYV 164
Query: 362 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRERHPGSF 526
DP ++V+D+++ +I T ++ IKF+ G++ M+T G N+GRVGTI E+ SF
Sbjct: 165 DPSVRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGGNVGRVGTIQKIEKQMASF 219
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 206 bits (502), Expect = 3e-52
Identities = 96/177 (54%), Positives = 123/177 (69%), Gaps = 2/177 (1%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGFMD 175
PS GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G MD
Sbjct: 141 PSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMD 200
Query: 176 VVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIR 355
VV I KT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD RTIR
Sbjct: 201 VVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIR 260
Query: 356 YPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRERHPGSF 526
+P+P IK+ D+++ D+ KI +F ESGN+C I G N+GRVG I E+H GSF
Sbjct: 261 FPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSF 317
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 200 bits (488), Expect = 2e-50
Identities = 90/165 (54%), Positives = 121/165 (73%)
Frame = +2
Query: 5 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 184
S+GPHK + +PLVI +RN+LKY+ E L I+K+ I VDGKVR D +PAG MDV+S
Sbjct: 32 SSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNILKKNEIYVDGKVRADKNFPAGVMDVIS 91
Query: 185 IXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 364
I T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGRTIR+P+
Sbjct: 92 IKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGRTIRFPN 151
Query: 365 PLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIV 499
LIK NDSI LD+ K++DFIKF G+LC++ G N+GR+G +
Sbjct: 152 LLIKSNDSIVLDLLNNKVIDFIKFSIGSLCVVIKGSNIGRIGVFI 196
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 190 bits (463), Expect = 2e-47
Identities = 91/175 (52%), Positives = 113/175 (64%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
P GPHKLRECLPL++ +RNRLKYAL E I++Q L+ VD R D YPAGFMDVV
Sbjct: 28 PRPGPHKLRECLPLLVIIRNRLKYALNAREGEMILRQGLVHVDNHPRRDGKYPAGFMDVV 87
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 361
I KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHDG IRYP
Sbjct: 88 EIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRIRYP 147
Query: 362 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRERHPGSF 526
DP + D+I ++ K +D IK G ++TGG N GR+G IV E HPG+F
Sbjct: 148 DPHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTGGANRGRIGEIVKVECHPGAF 202
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 132 bits (319), Expect = 5e-30
Identities = 65/165 (39%), Positives = 105/165 (63%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
P++GPHK EC+PL + L+YA E+ I+ ++ IKV+G+VRT+ +P G DVV
Sbjct: 31 PASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVV 90
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 361
SI KT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G +IR+
Sbjct: 91 SIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGLSIRFC 149
Query: 362 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 496
DP I + +I++ T+K++++I + ++ G+ GRVG I
Sbjct: 150 DPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVGVI 194
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 112 bits (270), Expect = 4e-24
Identities = 65/174 (37%), Positives = 93/174 (53%), Gaps = 9/174 (5%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
P GPH + LPL++ +RN L YA T E K++ + +VDG VR D +P GFMDV+
Sbjct: 32 PRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFMDVI 91
Query: 182 SIXKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI-- 352
+ T E FR++ Y VK F +H I EE K +++ T L HDGR I
Sbjct: 92 EVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILV 150
Query: 353 RYPDP------LIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 496
R DP + + D++ + + +I IKF G + +I GGRN+GRVG +
Sbjct: 151 RVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVV 204
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 107 bits (256), Expect = 2e-22
Identities = 55/165 (33%), Positives = 89/165 (53%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
PS G H + L L + +R+ LK A E +I+ + VDG+V D +P GFMD++
Sbjct: 32 PSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVDGRVIKDYKFPVGFMDII 91
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 361
I KT E++R++ D KGR +++I EE KLCK+ +T + HDG+ +
Sbjct: 92 EIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIID 149
Query: 362 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 496
+ V D I L + +I + + + G +ITGG++ G +GT+
Sbjct: 150 ENDYNVGDVIDLKVPDHEINEVFELKEGACVLITGGKHTGELGTV 194
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 105 bits (253), Expect = 5e-22
Identities = 60/173 (34%), Positives = 89/173 (51%), Gaps = 8/173 (4%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
PS GPH L +P+ I LR+ YA T E +I+ R+I+VDG+V TD +P G MDV+
Sbjct: 34 PSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILASRVIEVDGRVVTDYKFPVGLMDVL 93
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI--- 352
I + +R++ D + I PEEA YKL +++R T HDGR +
Sbjct: 94 HIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGRNVLIR 153
Query: 353 ----RYPDPL-IKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 496
Y + K D++ + I I+ + FE G L ++ GRN+G +G I
Sbjct: 154 KGSEAYSTAISYKTYDALLITIPRQSIVSHVPFEVGTLAIVVDGRNVGFMGRI 206
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 104 bits (249), Expect = 1e-21
Identities = 60/174 (34%), Positives = 88/174 (50%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
P+ G H + + L+ +R+ LK + E +I+ L+KVDGK + + GFMDV+
Sbjct: 27 PNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVI 86
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 361
I E +R++Y+ +G + + T E A KL KV+ P N L THDGRT
Sbjct: 87 EI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITD 144
Query: 362 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRERHPGS 523
D KV D + + KI + IK + GN IT G ++ + GTI E GS
Sbjct: 145 DKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGS 198
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 99.1 bits (236), Expect = 5e-20
Identities = 60/168 (35%), Positives = 85/168 (50%), Gaps = 3/168 (1%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
PS GPH L LPL + +R+ LKYA T +E I+ + +KVDG VR D +P G MDV+
Sbjct: 27 PSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVI 86
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR---TI 352
I T E++R++ D + + I+ EEA KL +V+ L HDGR T
Sbjct: 87 EIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNLITT 146
Query: 353 RYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 496
IK DS+ D+ I I + G ++ G N+G GT+
Sbjct: 147 LEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGSNVGFSGTL 194
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 98.7 bits (235), Expect = 7e-20
Identities = 61/179 (34%), Positives = 95/179 (53%), Gaps = 10/179 (5%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
PS GPH + + LPL++ +R+ LKYA E KI++ I +DG R + +PAG MDV+
Sbjct: 32 PSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVL 91
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV--KRVATGPKNVPYLVTHDGR--- 346
SI + +E + +++D GR ++ + ++ KLCK+ K V G N+ L HDGR
Sbjct: 92 SIPEMDETYLVLFDESGRISLKK--TDKTDVKLCKIVNKTVVKG-GNI-QLNLHDGRNQI 147
Query: 347 -----TIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRE 508
+ + + K DS+ + I I + F G L ITGG+++G IV E
Sbjct: 148 VKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKIVEVE 206
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 97.9 bits (233), Expect = 1e-19
Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
P+ H + +P++I LR+ LK E+ +I+ ++KVDG++ D +P GFMDV+
Sbjct: 28 PTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNMVKVDGRIVKDRRFPVGFMDVL 87
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRTIRY 358
SI + ++YD KG+ I + P KL K VK+ G + L HDG+TI
Sbjct: 88 SIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGKTIVT 146
Query: 359 PDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 496
I +D + + I +I + +K G+ ITGG ++G + TI
Sbjct: 147 DRKDINTSDVLLMKIPDLEIENVLKIAEGDKVFITGGSHVGELATI 192
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 97.1 bits (231), Expect = 2e-19
Identities = 60/187 (32%), Positives = 94/187 (50%), Gaps = 14/187 (7%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
P GPH + +PL+I +R+ L YA E KI+ + I VDG VR +P +P G MDVV
Sbjct: 35 PYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMDVV 94
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT--IR 355
I +T + +R++ + R + I+ EEA+ K+C++K + HDG+ +
Sbjct: 95 EIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVE 154
Query: 356 YPDP------LIKVNDSIQLDI------ATTKIMDFIKFESGNLCMITGGRNLGRVGTIV 499
DP + V DS+ L++ + K++D I FE G GR+ G VG +V
Sbjct: 155 IEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMTGRHSGEVGRVV 214
Query: 500 XRERHPG 520
+ G
Sbjct: 215 EIQTFEG 221
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 96.3 bits (229), Expect = 4e-19
Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 3/169 (1%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
PS GPH +PL + LR+ YA T E I+ + +KVDGKVR D YP G MDV+
Sbjct: 26 PSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMDVI 85
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI--- 352
+ NE +R+I D RI EA K+C+++ L HDGR I
Sbjct: 86 ELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNIIVD 145
Query: 353 RYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIV 499
+ + S+ +++ K+MD+ + + G N+GR GT++
Sbjct: 146 QDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNVGRHGTLI 194
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 94.7 bits (225), Expect = 1e-18
Identities = 48/164 (29%), Positives = 83/164 (50%)
Frame = +2
Query: 5 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 184
S+GPH + + L+ ++ A E K+VK + V+GK +P MD +S
Sbjct: 32 SSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTIS 91
Query: 185 IXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 364
N+ +R++ G+ T++ I E K+CKV ++ ++T D R ++
Sbjct: 92 FPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINY 151
Query: 365 PLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 496
IKV DS+ + +I+ +KFE G+LC+IT G++LG + I
Sbjct: 152 AKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVI 195
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 92.3 bits (219), Expect = 6e-18
Identities = 52/163 (31%), Positives = 82/163 (50%)
Frame = +2
Query: 11 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIX 190
GPH LPL + +R+ LK E +I+ + + VDG R D +P G DV+++
Sbjct: 29 GPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVGLFDVITLP 88
Query: 191 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 370
NE +R++ D KGR ++++ E KLC++ T L +DG I +
Sbjct: 89 LVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTVKGGKIQLNLNDGTNILGSND- 146
Query: 371 IKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIV 499
DS+ L I ++ +KFE GNL M+ GG++ G G I+
Sbjct: 147 YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKIM 189
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 91.9 bits (218), Expect = 8e-18
Identities = 60/167 (35%), Positives = 82/167 (49%), Gaps = 5/167 (2%)
Frame = +2
Query: 11 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIX 190
GPHK++E +PL I L+ LK T E +I+ + VDGKVR D YP G MDVV I
Sbjct: 29 GPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDVVEIP 88
Query: 191 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP-DP 367
+ R+I D T I+ E+AKYK ++ T V L DGR I +
Sbjct: 89 SADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNILLKGEE 148
Query: 368 LIKVN----DSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 496
L + N ++++++ KI + G MI GGRN G G I
Sbjct: 149 LSQYNLPTLTTLKIELPEQKITTAYTIKEGVYAMIIGGRNAGLHGKI 195
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 91.1 bits (216), Expect = 1e-17
Identities = 53/165 (32%), Positives = 82/165 (49%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
P G H +PLV+ LR+ LK A +E+ KI+ + + VDGKVR D Y G D +
Sbjct: 28 PMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGMFDTI 87
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 361
SI N +R++ + G+F H + +A K+CK+ L HDG T+
Sbjct: 88 SIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIVNKTALRGGKIQLNLHDGTTMIAS 145
Query: 362 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 496
+ K DS+ L + KI + G+L M+T G++ G +G +
Sbjct: 146 ND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEIGKV 189
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 89.4 bits (212), Expect = 4e-17
Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 1/166 (0%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
PS GPH +P+ ++LR+ L A EV ++ + VDG+ D +P G DV+
Sbjct: 32 PSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVL 91
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRTIRY 358
+I + NE +R++ D +G+ + +I EEA K K +++V+ + Y +T DGRT
Sbjct: 92 AIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRTF-L 149
Query: 359 PDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 496
D K + + +I KI + I E I G++ GR+G I
Sbjct: 150 GDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGKHTGRIGVI 195
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 88.6 bits (210), Expect = 8e-17
Identities = 50/162 (30%), Positives = 83/162 (51%)
Frame = +2
Query: 11 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIX 190
GPH + +PL + LR+ L E +++ + + VDG R D +P G MD+++I
Sbjct: 30 GPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSEGNVLVDGVARKDLRFPVGLMDIITIP 89
Query: 191 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 370
N +R++ D K R ++++ A KLC+++ + + + +DG I
Sbjct: 90 LNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIEGKTSIKEGKIQMRLNDGVNI-IGSNN 147
Query: 371 IKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 496
DSI L + K++ IK+E GNL MI GG + G VG+I
Sbjct: 148 YNTKDSIILSVPDKKVVKHIKYEVGNLAMIVGGSHAGEVGSI 189
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 88.6 bits (210), Expect = 8e-17
Identities = 56/168 (33%), Positives = 83/168 (49%), Gaps = 5/168 (2%)
Frame = +2
Query: 11 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIX 190
GPH LP+ ++LR + A +EV KI+ QR + V+G+ D G D+VSI
Sbjct: 30 GPHNAG-ALPVGVWLREHIGLAQNASEVKKILHQRDVLVNGRACKDSRMGLGVFDIVSIP 88
Query: 191 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 370
K + +R+ DVKG I E AK +LCK++ T L G + D
Sbjct: 89 KLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGANV-LADNT 147
Query: 371 IKVNDSIQLDIATT-----KIMDFIKFESGNLCMITGGRNLGRVGTIV 499
K DS+ + + T +I+D + GN+ MI GG++ G+VG IV
Sbjct: 148 YKAKDSVVVTLGTDGEDRFRIVDHFPYAEGNVAMIVGGKHSGKVGRIV 195
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 85.0 bits (201), Expect = 1e-15
Identities = 55/162 (33%), Positives = 80/162 (49%)
Frame = +2
Query: 11 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIX 190
G HK +PL+I LR+ LK E+ +I+ L+ VDGKV + GFMD +++
Sbjct: 30 GSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTVS 89
Query: 191 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 370
+ L + YD KG+ I E KL +VK + HDG T+
Sbjct: 90 GNDYL--VSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKD 147
Query: 371 IKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 496
IK DS+ + I +I+D +KF GN ITGG ++G + TI
Sbjct: 148 IKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATI 189
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 84.6 bits (200), Expect = 1e-15
Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 1/170 (0%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
P+ G H C+PL + LR+ L A E +++ R + VDG++ TD G MDV+
Sbjct: 28 PNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLATRQVLVDGRIETDLGRGVGLMDVL 87
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 361
++ + + FR I DV G+ I+ + A KLC+V +T + HDGR I
Sbjct: 88 TVGE--DSFRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGRNILVS 145
Query: 362 D-PLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRE 508
D L D++ + + + F G +TGG ++G +V R+
Sbjct: 146 DAKLYDSGDTLVISLPDQSVAGHHPFSKGATAYLTGGSHIGITAKVVSRD 195
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 72.9 bits (171), Expect = 4e-12
Identities = 45/162 (27%), Positives = 72/162 (44%)
Frame = +2
Query: 11 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIX 190
G H +P + LR+ L T E K + ++VDG RT + G MDVV +
Sbjct: 35 GAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIYSGNVEVDGVKRTSLHHGIGLMDVVELG 94
Query: 191 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 370
T +++R++ +I E K+C+V + + HDGR++ D
Sbjct: 95 GTGDIYRMVPSGGAILKPVKIEAAEKDRKICRVTSKTSISGGRTQIGFHDGRSL-ISDEK 153
Query: 371 IKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 496
+ V DS + + KI+ + E G ++T G N G GTI
Sbjct: 154 VSVGDSCLVQVPGQKILKVARMEKGAHAVVTRGTNAGSTGTI 195
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 69.7 bits (163), Expect = 4e-11
Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 3/168 (1%)
Frame = +2
Query: 5 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 184
S+GPH LP+ I+LR+ +++AL EV KI+ R + ++G + TD D++S
Sbjct: 27 SSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQVLLNGHIVTDEHIGIDVFDIIS 85
Query: 185 IXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 364
K ++ + ++ D KGR + I+ + AK +L KV T + G +
Sbjct: 86 FPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANKTTIKGGKTQINLTSGANF-IGE 144
Query: 365 PLIKVNDSIQLDIA---TTKIMDFIKFESGNLCMITGGRNLGRVGTIV 499
K DS+ + IA + + GN+ +I GG++ + G +V
Sbjct: 145 ENCKGKDSLVIGIAGDDRFAVQQHFPYAVGNMAIIIGGQHTMKTGKLV 192
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 69.3 bits (162), Expect = 5e-11
Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 1/172 (0%)
Frame = +2
Query: 11 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIX 190
GPH +PL+I LR+ L YA E + + + ++GK +D P G D+++
Sbjct: 30 GPHG-ESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFT 88
Query: 191 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT-IRYPDP 367
+ E +R+ GR + I P+ A+ KL K+ L HDG T I D
Sbjct: 89 EREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVEDDQ 148
Query: 368 LIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRERHPGS 523
DSI + +++ ++E G L G + G VG + + PGS
Sbjct: 149 TYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDGAHAGEVGEVEEIQVTPGS 200
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 51.6 bits (118), Expect = 1e-05
Identities = 35/118 (29%), Positives = 58/118 (49%)
Frame = -2
Query: 526 EGAGMSLAXHDGAHTPQVTASRDHTQVPRLKLDEVHNLRSCNV*LDGIVDFDKWVWVADG 347
EG + LA D V + DH Q ++LD + +L +V +G+ D + V +G
Sbjct: 76 EGTDVLLAALDHPDATGVVTTGDHAQSADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNG 135
Query: 346 AAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQFISLXN*DNI 173
AA+++ R+ L QLVL D V ES+L ++D + FI+L + D++
Sbjct: 136 AAVVQTDARHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDEPEVFIALFDGDDV 193
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 37.9 bits (84), Expect = 0.14
Identities = 24/76 (31%), Positives = 41/76 (53%)
Frame = +2
Query: 5 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 184
+T P +L + + L + ++ K L E L I KQ+ +KV+ K + DPT+P D S
Sbjct: 100 NTQPRELLKVVNLDPKIMDKEKKKL--EEELDINKQQKVKVEHKKQLDPTFPRNDFDKFS 157
Query: 185 IXKTNELFRLIYDVKG 232
I +++ L+ + KG
Sbjct: 158 IEDMDQVLNLLSNYKG 173
>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000514 - Ferroplasma acidarmanus fer1
Length = 317
Score = 37.5 bits (83), Expect = 0.19
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = -2
Query: 205 QFISLXN*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQGQALA 26
Q I+ N +NI + I + N P E LFH F DFVSG ++ I + + + +A
Sbjct: 50 QVINTYNDENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGIMKIMYLDRKIA 109
Query: 25 QLV 17
Q +
Sbjct: 110 QFI 112
>UniRef50_A5BNN8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 906
Score = 35.5 bits (78), Expect = 0.76
Identities = 32/103 (31%), Positives = 44/103 (42%)
Frame = -3
Query: 471 RPPVIIHKFPDSNLMKSIIFVVAMSNWMESLTLISGSG*RMVRPSCVTKYGTFLGPVATR 292
RPP H SN + S + A S +S+TLI +R T TF+ VA
Sbjct: 298 RPPRTAHIAQSSNPLLSRLDSTASST-SQSITLIGSDYDAYLRYQAATS--TFVASVAQT 354
Query: 291 LTLHNLYLASSGVIRWIVNLPLTS*IRRNSSLVXSIETTSINP 163
+ + SS + WI++ + I N L SI TTS P
Sbjct: 355 DNVSVCFTQSSSLGPWILDSGASDHISGNKHLFSSITTTSALP 397
>UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1);
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1)
- Tribolium castaneum
Length = 768
Score = 33.1 bits (72), Expect = 4.1
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +2
Query: 326 LVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMI 460
+ DGR ++ D +IKVND ++TT+I+D ++ G +C++
Sbjct: 708 VAARDGR-LKPGDRVIKVNDESVEHLSTTEIIDLLRIVRGPVCIV 751
>UniRef50_Q22BQ8 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 1926
Score = 32.7 bits (71), Expect = 5.4
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -2
Query: 277 LVLSLLRGDTVDCESALNIID*TKQFISLXN*DNIHKSSRISRVSPNFPI 128
+V + D +D + LNI D T+QFIS D K + +S ++ NF I
Sbjct: 295 IVYKMRNKDQIDIVTDLNITDQTQQFISFNISDYSFKQTSVSILNSNFTI 344
>UniRef50_Q9H7Y0 Cluster: Uncharacterized protein CXorf36 precursor;
n=17; Amniota|Rep: Uncharacterized protein CXorf36
precursor - Homo sapiens (Human)
Length = 182
Score = 32.7 bits (71), Expect = 5.4
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 152 TYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 298
+YPA + D I + E+FRL+ + + RI + K C ++RV
Sbjct: 96 SYPANYSDDSKIWRPVEIFRLVSKYQNEISDRRICASASAPKTCSIERV 144
>UniRef50_UPI000058722D Cluster: PREDICTED: similar to Ehf protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to Ehf protein - Strongylocentrotus purpuratus
Length = 510
Score = 32.3 bits (70), Expect = 7.1
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = -2
Query: 292 LDFTQLVLSLLRGDTVDCESALNIID*TKQFISLXN*DNIHKSS---RISRVSPNFPINL 122
+D T L+ LL G+ D S + + L D +HKS +++ SPN PINL
Sbjct: 110 MDLTMLMEDLLHGNMTDHFSHQLCDNQYHSNVGLGGNDGLHKSDFLDNLTQFSPNSPINL 169
Query: 121 YEALF 107
++F
Sbjct: 170 STSMF 174
>UniRef50_A4Y015 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas mendocina ymp
Length = 783
Score = 32.3 bits (70), Expect = 7.1
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -2
Query: 394 LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLR 257
L+ I+ F + + + G + QVR+ILR+GRH L VL + R
Sbjct: 420 LNSILGFAQLLEMDRGTPAQQAQVRHILRAGRHLLGLINEVLDIAR 465
>UniRef50_A2DLM0 Cluster: Ser/Thr protein phosphatase, putative;
n=2; Trichomonas vaginalis G3|Rep: Ser/Thr protein
phosphatase, putative - Trichomonas vaginalis G3
Length = 475
Score = 32.3 bits (70), Expect = 7.1
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = -2
Query: 403 NV*LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALN 224
NV + I + +WV G RY+ R R+ H + + +LL D VDCE+ LN
Sbjct: 400 NVTRETINNAAEWVRTT-GEGQWRYRERIYTRADEHNAFYYCALKALLPDDIVDCENKLN 458
Query: 223 I 221
I
Sbjct: 459 I 459
>UniRef50_Q5FHB1 Cluster: High-affinity zinc uptake system protein
znuA; n=4; canis group|Rep: High-affinity zinc uptake
system protein znuA - Ehrlichia ruminantium (strain
Gardel)
Length = 287
Score = 31.9 bits (69), Expect = 9.4
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +2
Query: 215 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 340
+YD R TI RIT E A+ K+K++ K PY+VTHD
Sbjct: 153 VYDKNARLTIIRIT-ELAE----KIKQLLNTVKTKPYVVTHD 189
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 562,673,719
Number of Sequences: 1657284
Number of extensions: 11176627
Number of successful extensions: 30251
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 29324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30227
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33455602480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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