Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_G24
(527 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 283 1e-77
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 283 1e-77
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 281 3e-77
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 28 0.75
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 1.3
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 2.3
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 3.0
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 5.3
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 5.3
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 7.0
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 7.0
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 9.2
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 9.2
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 283 bits (694), Expect = 1e-77
Identities = 129/175 (73%), Positives = 147/175 (84%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
PS GPHK RECLPL++FLRNRLKYAL G EV I+ QRLIKVDGKVRTD T+P GFMDV+
Sbjct: 31 PSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVI 90
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 361
S+ KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYP
Sbjct: 91 SVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150
Query: 362 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRERHPGSF 526
DPLIKVND+I+L++ T KI FIKF++ M+TGGRN+GRVGTIV RE H GSF
Sbjct: 151 DPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSF 205
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 283 bits (694), Expect = 1e-77
Identities = 129/175 (73%), Positives = 147/175 (84%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
PS GPHK RECLPL++FLRNRLKYAL G EV I+ QRLIKVDGKVRTD T+P GFMDV+
Sbjct: 31 PSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVI 90
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 361
S+ KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYP
Sbjct: 91 SVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150
Query: 362 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRERHPGSF 526
DPLIKVND+I+L++ T KI FIKF++ M+TGGRN+GRVGTIV RE H GSF
Sbjct: 151 DPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSF 205
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 281 bits (690), Expect = 3e-77
Identities = 128/175 (73%), Positives = 147/175 (84%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
PS GPHK RECLPL++FLRNRLKYAL G EV I+ QRLI+VDGKVRTD T+P GFMDV+
Sbjct: 31 PSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDGKVRTDSTFPTGFMDVI 90
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 361
S+ KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYP
Sbjct: 91 SVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150
Query: 362 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRERHPGSF 526
DPLIKVND+I+L++ T KI FIKF++ M+TGGRN+GRVGTIV RE H GSF
Sbjct: 151 DPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSF 205
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 28.3 bits (60), Expect = 0.75
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +2
Query: 107 KQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 286
K++ K+ +R + +P + +I + F + G + +I K LC
Sbjct: 13 KRKFDKLRNVIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCS 72
Query: 287 VK-RVATGPKNVPYLVTHDGR 346
V T PKN Y+V GR
Sbjct: 73 NPIDVHTDPKNTEYIVASGGR 93
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -2
Query: 166 SSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 11
SS+ + P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 2.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 373 QSQRFHPVRHCNYED 417
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 340 WPHHPLPRPTYQSQR 384
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 5.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 343 PHHPLPRPTYQSQRFHPVRHCNYEDY 420
PH+ P + Q+ HPV+ N+ Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 268 SLLRGDTVDCESALNIID*TKQ 203
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 41 LVIFLRNRLKYALTGNEVLKIV 106
L+ F+ RL++ LT E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 346 HHPLPRPTYQSQRFHPVR 399
H PLPRP Q + PVR
Sbjct: 720 HKPLPRPPVQVETREPVR 737
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 159 G*VGSVLTFPSTFMRRCFTIFR 94
G +G LTFP+ +RR F + R
Sbjct: 237 GIIGQTLTFPADVLRRRFQVNR 258
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 24.6 bits (51), Expect = 9.2
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = -2
Query: 154 SRVSPNFPINLYEALFHNFQDFVSGQSIL 68
S++ P I+LY L+H+ +++ Q ++
Sbjct: 410 SKIDPRVVISLYPDLYHSELSYIAFQGVI 438
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,809
Number of Sequences: 5004
Number of extensions: 45420
Number of successful extensions: 136
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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