Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_G24
(527 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 263 7e-71
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 258 3e-69
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 257 5e-69
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 4.0
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 28 5.3
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 27 7.1
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 27 7.1
08_02_0757 + 20840885-20841281,20842937-20843025,20843132-208432... 27 9.3
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 263 bits (644), Expect = 7e-71
Identities = 119/175 (68%), Positives = 142/175 (81%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
PS+GPHK RECLPL++ LRNRLKYALT EV+ I+ QR + VDGKVRTD TYPAGFMDVV
Sbjct: 47 PSSGPHKARECLPLILILRNRLKYALTYREVISILMQRHVMVDGKVRTDKTYPAGFMDVV 106
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 361
SI KT E FRL+YD KGRF +H I E+AK+KLCKV+ V G K +P+L T+DGRTIRYP
Sbjct: 107 SIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDGRTIRYP 166
Query: 362 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRERHPGSF 526
DPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG I RE+H GSF
Sbjct: 167 DPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNTGRVGVIKSREKHKGSF 221
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 258 bits (631), Expect = 3e-69
Identities = 115/175 (65%), Positives = 141/175 (80%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR + VDGKVRTD TYPAGFMDV+
Sbjct: 31 PSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVI 90
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 361
SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRTIRYP
Sbjct: 91 SIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYP 150
Query: 362 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRERHPGSF 526
DPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG I RE+H GSF
Sbjct: 151 DPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSF 205
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 257 bits (629), Expect = 5e-69
Identities = 114/175 (65%), Positives = 141/175 (80%)
Frame = +2
Query: 2 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 181
PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR + VDGKVRTD TYPAGFMDV+
Sbjct: 31 PSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVI 90
Query: 182 SIXKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 361
SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRTIRYP
Sbjct: 91 SIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYP 150
Query: 362 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVXRERHPGSF 526
DP+IK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG I RE+H GSF
Sbjct: 151 DPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSF 205
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 206 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 310
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +2
Query: 332 THDGRTIRYPDPLIKVNDSI-QLDIA---TTKIMDFIKFESGNLCMITG 466
+HD + + PDPL ND I ++ IA T ++D+ + + C + G
Sbjct: 599 SHDDKVVSEPDPLPVHNDKIDEVTIAAIQTCALVDYQQSQQNKPCSVNG 647
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 101 FSGLRFRSKHTSDDSSGKSPGASTRATCG 15
FSGLR S+ S S SP A++ CG
Sbjct: 9 FSGLRLDSRRLSSSSLPTSPSAASSNGCG 37
>02_05_0672 + 30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 175 IHKSSRISRVSPNFPINLYEALFHNFQDFVSG 80
+H+SS ++R++P F + Y L H + ++ G
Sbjct: 1024 LHRSSSVARIAPEFVV--YSELLHTKRSYMHG 1053
>08_02_0757 +
20840885-20841281,20842937-20843025,20843132-20843257,
20843617-20844333,20844420-20844630,20844739-20845238,
20845998-20846023,20846393-20846531,20846579-20846660,
20846990-20847153
Length = 816
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 492 VPTRPKLRPPVIIHKFPDSNLMKSIIFVVAMSNWMESLTLISGSG*RM 349
+P RP +RP + K P S SI+ S W E + L G+ R+
Sbjct: 461 IPERPMVRPYHVHSKDPCSFDAGSIVDAWWNSGWWEGIVLQQGNDRRL 508
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,684,041
Number of Sequences: 37544
Number of extensions: 323677
Number of successful extensions: 793
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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