Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_G22
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   5.5  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   7.2  
SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   9.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 176  YSHTVGILHCDPLDDLITQYLDVSWITFRAASKATF 69
            YSH + +   DP++ +   YLD  ++ F A  +  F
Sbjct: 925  YSHLIPVYSVDPMEKICDAYLD-QYLWFEADRRHLF 959


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 346  PSGWERLRL*RAWVQACLCSLFRLLWSSF 260
            P G  +L    +W++ C+ S+F + W SF
Sbjct: 1404 PRGCYQLGPVLSWLKRCVISIFIVFWISF 1432


>SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 301 ACLCSLFRLLWSSF*APSPALALLTHARGSVSSSKKRAYLFTTPT 167
           AC C L+  L+ S  +PSP L  L    G + S      L+  P+
Sbjct: 33  ACECFLYPKLFDSQRSPSPFLRWLFSVLGVLMSMDVFCILYAYPS 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,850
Number of Sequences: 5004
Number of extensions: 35088
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)