Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_G22
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)                 28   5.8  
SB_49480| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 162 YGVGVVNRYALFLDDETDPLACVKSARAGEGAQKE 266
           Y +GV NR+ L L DE DP    K +   E A KE
Sbjct: 6   YSIGVNNRFGLLLSDEEDPETTFKES---EKAAKE 37


>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
          Length = 4607

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 179  HYSHTVGILHCDPLDDLITQYLDVSWITFRAASKATF 69
            H++  +GIL  + +D L T    V+++ F  AS A F
Sbjct: 3557 HFNKAMGILLQENIDSLFTTLCSVAYVRFFLASLAEF 3593


>SB_49480| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 328 TVPTRKGIKETQNVKSQDIKSGEQQKG 408
           T  TR  +K+  NVK  D +SG+ Q G
Sbjct: 7   TDSTRINVKDMTNVKKDDTRSGQTQAG 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,883,517
Number of Sequences: 59808
Number of extensions: 286620
Number of successful extensions: 501
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)