Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_G18
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 191 5e-50
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 32 0.069
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 28 0.84
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 27 2.0
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 2.6
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 2.6
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 25 6.0
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 25 7.9
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 25 7.9
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 191 bits (466), Expect = 5e-50
Identities = 93/169 (55%), Positives = 125/169 (73%), Gaps = 2/169 (1%)
Frame = +1
Query: 25 ISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVPMPKLKAFQKIQIRLVR 198
++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP P LKAF K Q RL R
Sbjct: 22 VAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVPQPLLKAFHKCQARLTR 81
Query: 199 ELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSXTLTSVYDAILEDLVFPAEIVG 378
ELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRS TLT+V++AILED+VFP EI+G
Sbjct: 82 ELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAVHNAILEDIVFPTEIIG 139
Query: 379 KRIRVKLDGSQLIKVHLXKNQQTTIEHKVDTFQSVYXKLTGREVTFEFP 525
KR R DG + IKV L T+++K+ +F SVY KLTG+ VTFEFP
Sbjct: 140 KRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFP 188
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 31.9 bits (69), Expect = 0.069
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 316 TLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLXKNQQTTIEHKVDTF-QSVYXK 492
+L + YD + EDL ++ +GK+ ++ ++L VHL + TIE + F Q+V +
Sbjct: 566 SLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLFQ 622
Query: 493 LTGREVTFEFP 525
T +F+ P
Sbjct: 623 STKSTASFQLP 633
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 28.3 bits (60), Expect = 0.84
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +1
Query: 226 HVVFVGDRKILPKPSHKTRVANKQKRPRSXTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 405
H V V D+ + P N+Q R +L+ + D + + V E V R K G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650
Query: 406 SQLIKVHL-XKNQQTTIEHKV 465
S ++ L K+ Q EHK+
Sbjct: 1651 SYILNPSLDLKHTQEMFEHKL 1671
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -2
Query: 269 LGLGRILRSPTKTTCLPLNFFSSSRTS 189
LG I +SPTK PLNFF SSR S
Sbjct: 33 LGTNVIAQSPTK----PLNFFHSSRWS 55
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.6 bits (56), Expect = 2.6
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +2
Query: 242 ETVRSCLSPATKPVLLTNKRGHAQ 313
E+ + ++ +TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 139 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 231
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 25.4 bits (53), Expect = 6.0
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 16 VPRISQALVELETNS-DLKAQLRELYITKAKEIELHNKKSIIIYVP 150
+PR S+ LV LETN D + L I + S++ Y+P
Sbjct: 150 LPRSSERLVTLETNEIDASVVIETLLKYILSRISFIPRVSVVPYIP 195
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 297 KEATLXDIDLCVRCYPRGLGLPC 365
++AT+ ++D C C RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 25.0 bits (52), Expect = 7.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 446 VCWFLXKCTLMSCEPSNLTLMR 381
+C FL K T SC NL L++
Sbjct: 207 LCSFLPKSTYRSCRSDNLDLLK 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,271,284
Number of Sequences: 5004
Number of extensions: 43742
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -