Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_G18
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 171 4e-43
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 167 4e-42
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 73 2e-13
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 29 2.0
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 3.5
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 3.5
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 6.1
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 171 bits (415), Expect = 4e-43
Identities = 83/169 (49%), Positives = 126/169 (74%), Gaps = 2/169 (1%)
Frame = +1
Query: 25 ISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVR 198
++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP KAF+KI +RLVR
Sbjct: 23 VAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVPYRLRKAFKKIHVRLVR 82
Query: 199 ELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSXTLTSVYDAILEDLVFPAEIVG 378
ELEKKFSGK VV V R+I+ P + V +RPR+ TLT+V+D ILED+V+PAEIVG
Sbjct: 83 ELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAVHDGILEDVVYPAEIVG 138
Query: 379 KRIRVKLDGSQLIKVHLXKNQQTTIEHKVDTFQSVYXKLTGREVTFEFP 525
KRIR +LDG+++IK+ L ++ E+K++TF +VY +L G++V FE+P
Sbjct: 139 KRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLCGKDVAFEYP 187
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 167 bits (407), Expect = 4e-42
Identities = 84/167 (50%), Positives = 120/167 (71%), Gaps = 2/167 (1%)
Frame = +1
Query: 31 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 204
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 205 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSXTLTSVYDAILEDLVFPAEIVGKR 384
EKKFSGK VV V R+I+ P + V RPR+ TLT+V+D ILED+V+PAEIVGKR
Sbjct: 98 EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKR 153
Query: 385 IRVKLDGSQLIKVHLXKNQQTTIEHKVDTFQSVYXKLTGREVTFEFP 525
+R LDG +++K+ L ++ E+K+DTF SVY +L G++V F++P
Sbjct: 154 VRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYP 200
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 72.5 bits (170), Expect = 2e-13
Identities = 41/98 (41%), Positives = 62/98 (63%)
Frame = +1
Query: 85 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 264
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKKFSGK VVF R+I+ +
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88
Query: 265 PSHKTRVANKQKRPRSXTLTSVYDAILEDLVFPAEIVG 378
P +K + PR+ TL +V+D ILED+V ++G
Sbjct: 89 PLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 299 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 183
F L A+ L L L +L T CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +1
Query: 37 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 171
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +1
Query: 37 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 171
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +1
Query: 37 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 171
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,941,283
Number of Sequences: 37544
Number of extensions: 291880
Number of successful extensions: 720
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -