Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_G18
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   223   5e-59
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z68315-2|CAA92668.1|  535|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U41263-5|AAC24427.1|  400|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  223 bits (546), Expect = 5e-59
 Identities = 103/171 (60%), Positives = 137/171 (80%), Gaps = 1/171 (0%)
 Frame = +1

Query: 22  RISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRE 201
           ++SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P+LKAF KI   LVRE
Sbjct: 22  QVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVPQLKAFHKIHPALVRE 81

Query: 202 LEKKFSGKHVVFVGDRKILPKPSHKTRVA-NKQKRPRSXTLTSVYDAILEDLVFPAEIVG 378
           LEKKF G+ ++ +  R+ILPKP   ++    KQKRPRS TLT+V+DA L++LV+PAE+VG
Sbjct: 82  LEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPAEVVG 141

Query: 379 KRIRVKLDGSQLIKVHLXKNQQTTIEHKVDTFQSVYXKLTGREVTFEFPEP 531
           +RIRVKLDG ++ KVHL K+ QT + HK+  F SVY KLTG++VTFEFP+P
Sbjct: 142 RRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFPDP 192


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 41  SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 151
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


>Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical
           protein B0334.4 protein.
          Length = 210

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +1

Query: 304 PRSXTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLXKNQQTTIEHKVDTFQSV 483
           P S     + + +LE  +    IV K++ VK   S L +V    ++ T I+      +SV
Sbjct: 27  PNSHAKHIISEDVLERQITDNTIVTKKLIVKQGSSILKRVPRWISRMTDIQVVPVIEESV 86

Query: 484 YXKLTGREVTF 516
           Y K++ + VT+
Sbjct: 87  YDKVSKKLVTY 97


>Z68315-2|CAA92668.1|  535|Caenorhabditis elegans Hypothetical
           protein F28C6.2 protein.
          Length = 535

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +1

Query: 334 DAILEDLVFPAEIVGKRIRVKL--DGSQLIKVH-LXKNQQTTIEHKVDTFQSVYXKLTGR 504
           D+I E+ + P  I+ + +  KL   G+ L   H + KN   TI   + T +    K+TG+
Sbjct: 327 DSISEEFL-PINIIAQEMLEKLMSSGNNLDVCHRMLKNTTATITRVIKTLEVRQPKITGQ 385

Query: 505 E 507
           E
Sbjct: 386 E 386


>U41263-5|AAC24427.1|  400|Caenorhabditis elegans Hypothetical
           protein T19D12.7 protein.
          Length = 400

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 264 LRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHIDD 136
           L+QD     K +MF    +F   DK  +D  + L+F+  + DD
Sbjct: 167 LQQDFRSFQKVWMFNKTEMFSADDKTFIDSNRSLEFQVLNEDD 209


>U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical
           protein C27D6.1 protein.
          Length = 782

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 13  RVPRISQALVELETNSDLKAQLRELYITKAKEIELHNKKSI 135
           R  R S+ L ELE       Q +E +  K++E+E+ NK+ +
Sbjct: 262 RATRNSKRLPELELELAETVQAKEEWQVKSQEMEIQNKQLV 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,589,421
Number of Sequences: 27780
Number of extensions: 248363
Number of successful extensions: 681
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)