Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_G18
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.53 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.53 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   2.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   6.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +1

Query: 271 HKTRVANKQKRPRSXTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLXKNQQTT 450
           H     N   +     L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T
Sbjct: 20  HGAVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMT 76


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +1

Query: 271 HKTRVANKQKRPRSXTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLXKNQQTT 450
           H     N   +     L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T
Sbjct: 20  HGAVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMT 76


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 25  ISQALVELETNSDLKAQLRE 84
           +S AL EL  N D++ +LRE
Sbjct: 313 MSNALYELALNQDVQKKLRE 332


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +1

Query: 319 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLXKNQQTT 450
           L S Y+ ++  +V   + +   +++KL  SQLI V+L KNQ  T
Sbjct: 32  LLSNYNKLVRPVVNVTDAL--TVKIKLKLSQLIDVNL-KNQIMT 72


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 477 VCIQXANGTRSYLRVPRTLFVNLAY 551
           VC++   G + YLR+     +NL +
Sbjct: 163 VCLENCTGYQQYLRLLEVPQINLEW 187


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 18/71 (25%), Positives = 29/71 (40%)
 Frame = +1

Query: 112 ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVAN 291
           EL   KS +  +P+P  +    +      + +KK +G    F   +    K S K R  +
Sbjct: 552 ELKRLKSTVSLLPLPLARTPSVMSASSTCKKDKKNAGSGSRFTIYK--ANKASKKKREKS 609

Query: 292 KQKRPRSXTLT 324
             K+ R  T T
Sbjct: 610 SAKKERKATKT 620


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,365
Number of Sequences: 438
Number of extensions: 2724
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)