Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_G16
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|... 50 3e-07
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 27 1.8
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 27 3.1
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 26 5.4
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.4
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.4
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 25 7.1
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 25 9.4
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 25 9.4
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 25 9.4
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po... 25 9.4
>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 50.0 bits (114), Expect = 3e-07
Identities = 26/71 (36%), Positives = 39/71 (54%)
Frame = +2
Query: 71 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 250
SGV VS C ++E+K K RYVVF + D K V + +++ FL DL +
Sbjct: 4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPE---K 60
Query: 251 ECXYGLFDFEY 283
+C Y ++DFE+
Sbjct: 61 DCRYAIYDFEF 71
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 327 KLFLMSWCPDTAKVKKXMLYSSSFDALKKS 416
K+ +SW PD A +K M+YSSS D L+++
Sbjct: 80 KIIFISWSPDVAPIKSKMVYSSSKDTLRRA 109
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Frame = +3
Query: 351 PDTAKVKKXMLY--SSSFDALKKSLXRSSEVHPSDRPLGSVSGGRRREAPRHRSPINSIY 524
PD K K SS+ ++ S + +H P SV A R P + I
Sbjct: 194 PDIQKQPKGFFSYPSSTVSSIAPSTLEAGNLHSQQPPKFSVDSSVDDNAITPRKPFSKIP 253
Query: 525 TRARDETEPALRHS 566
R T+P L +S
Sbjct: 254 NRLSPSTQPLLSNS 267
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 330 LFLMSWCPDTAKVKKXMLYSSS 395
L L+S+ P+ A V++ MLY+SS
Sbjct: 81 LQLISYVPENANVRRKMLYASS 102
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +2
Query: 98 KTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECXYGLFDF 277
K + + ++ + K ++ +D K+ D + + + EY F ++L+ TG+ Y DF
Sbjct: 108 KCSSDFLEANVKSQFTTCENKDSKE-DYQILHNKRLEYVSFNDELKSLETGQPLYCFQDF 166
Query: 278 E 280
+
Sbjct: 167 Q 167
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = -2
Query: 297 WHWCVYSKSNRPYXHSP--VPPFCRSSRNCSYSALRSPTVSTSICF 166
W++ Y+ S R Y + VPP+CR +R+ + CF
Sbjct: 122 WNFVDYALSLRKYGWTDDVVPPYCRKVLTYKSLGIRTAVYVGAFCF 167
>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 386
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -3
Query: 434 F*TPXKGLFQSVERARVQHXLLDLGGVRAPRHQEELLF 321
F TP F S+E + LGGV +PR Q LF
Sbjct: 253 FNTPFSSFFASLEETPGSYTA-HLGGVLSPREQTPALF 289
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = +3
Query: 441 PSDRPLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHS-CPERHAATTP 596
P P S G RR + R R P R R+E +R P R ++ P
Sbjct: 190 PPAEPAESPFGKRRTNSGRFRDPARDPSDRVREEPREWVRRGPLPPRESSERP 242
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -3
Query: 563 VSESGFGFVASSCVNAVYWRSVARSFSSTAS*DASERSVAWMYF*TPXKGLFQSVER 393
+ E +G ++ SCV+ YW + + A +R + + + P K Q +ER
Sbjct: 56 LEEEQWGVLSGSCVDGTYWSAEEKELFFQAVARNGKRDLDLIAYSIPSKSAVQ-IER 111
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 80 TVSDACKTTYEEIKKDKKHRYV 145
TV D C + IK KH YV
Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 77 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV 181
VT D KT + +K KH+ V YIR K +D+
Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVDI 146
>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = -1
Query: 349 HHDIRKSFCFLLASDVXLALVRVFKVKQAIXAFPGTALLQILEELFVF 206
HH S C L + L + + +KQ + + G+ +L++L + +F
Sbjct: 192 HHIRIISKCSLKLKSMVLVSMIIPSIKQTLDFYSGSQILRLLNDFSMF 239
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,357
Number of Sequences: 5004
Number of extensions: 39582
Number of successful extensions: 114
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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