Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_G16
(649 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55463| Best HMM Match : OPA3 (HMM E-Value=0) 34 0.11
SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20) 29 3.3
SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013) 29 3.3
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7) 28 5.7
SB_38155| Best HMM Match : DUF414 (HMM E-Value=4.4) 27 9.9
SB_26352| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)
Length = 387
Score = 33.9 bits (74), Expect = 0.11
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 327 KLFLMSWCPDTAKVKKXMLYSSSFDALKK 413
KL L+ WCPD ++K M+ +++F +KK
Sbjct: 329 KLVLIFWCPDNCEIKSRMVSAATFQDVKK 357
>SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 31.9 bits (69), Expect = 0.46
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Frame = +2
Query: 71 SGVTVSDACKTTYEEIK-KDKKHRYVVFYIRDE----------KQIDVETVGERNAEYEQ 217
SG+ + D Y+ ++ K+K H++ F I D+ K++D T E A ++Q
Sbjct: 4 SGIKIDDESLHLYQTMQGKEKSHKFATFKISDDGKMVVIDHILKRVDTHTREEDRAIFDQ 63
Query: 218 FLEDLQKGGTGECXYGLFDFEY 283
LE L E Y L+D +
Sbjct: 64 MLEKL---SDSEPRYILYDLNF 82
>SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 327 KLFLMSWCPDTAKVKKXMLYSSSFDALKK 413
KL L+ WCPD +K M+ +++F + K
Sbjct: 82 KLVLIFWCPDNCGIKNKMVSAATFKEVMK 110
>SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -2
Query: 282 YSKSNRPYXHSPVP-PFCRS--SRNCSYSALRSP 190
YS +RPY HSPV P+C S R YS + P
Sbjct: 112 YSPVDRPYCHSPVDRPYCHSPVDRPYCYSPVDHP 145
>SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)
Length = 151
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 330 LFLMSWCPDTAKVKKXMLYSSSFDALKKSLXRSS 431
L +SWC D A ++K M +S+ D ++K ++
Sbjct: 93 LVFISWCSDKAPIEKKMKLASTQDYVRKKFSEAT 126
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +2
Query: 71 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV-----ETVGERNAEYEQ--FLED 229
SG+ V D + +K K H+Y +F I DE + V ++V E ++ F +
Sbjct: 4 SGIKVDDESLKLSQTMKSMKTHKYAIFKICDEANMVVIDQTFKSVVTNTREEDRAIFYQM 63
Query: 230 LQKGGTGECXYGLFDFEY 283
++K E Y L+D ++
Sbjct: 64 VEKLSDREPRYILYDMKF 81
>SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)
Length = 310
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 333 FLMSWCPDTAKVKKXMLYSSSFDALKK 413
FL C D A +KK ML S+++ LKK
Sbjct: 256 FLFDRCSDEAPIKKKMLAGSTWEYLKK 282
>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
Length = 540
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = -1
Query: 331 SFCFLLASDVXLALV----RVFKVKQAIXAFPGTALLQILEELFVFGVAFANRLDVDLFL 164
S CFL + V L L+ R F + + FP + + + + F +R VD+FL
Sbjct: 441 SMCFLSRAHVDLFLIACSCRCFPSRSHVDVFPIAFSCRCVSHHVLMSMCFPSRAHVDVFL 500
Query: 163 V 161
+
Sbjct: 501 I 501
>SB_38155| Best HMM Match : DUF414 (HMM E-Value=4.4)
Length = 361
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 492 PRHRSPINSIYTRARDETEPALRHSCPERHAATTPL 599
P+HR P + + T ++ TEP ++ P H +T L
Sbjct: 273 PKHRRPPSRVRTSSQVSTEPPIKKD-PTHHKRSTTL 307
>SB_26352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 381 LYSSSFDALKKSLXRSSEVHPSDRPLGSVSGG-RRREAPRHRSPINSI--YTRAR 536
L + FD + K S E++P D + +++ R++A R IN++ YT+ R
Sbjct: 66 LKEAGFDEIVKKYRDSKEINPEDLDVQNITSSLTRKQAEAVRRRINTLNEYTKKR 120
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,445,406
Number of Sequences: 59808
Number of extensions: 331761
Number of successful extensions: 997
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -