Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_G16
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.       64   1e-10
AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated...    64   1e-10
L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.       39   0.004
AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated...    39   0.004
AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated...    39   0.004
Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical p...    30   1.6  
Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p...    30   1.6  
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p...    30   1.6  
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n...    27   8.7  
AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical ...    27   8.7  

>L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.
          Length = 152

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
 Frame = +2

Query: 65  MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 238
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++K 
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60

Query: 239 -GGTGECXYGLFDFEYTHQCQXHVG 310
                EC Y   D E T Q Q   G
Sbjct: 61  VEDGKECRYAAVDVEVTVQRQGAEG 85



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +3

Query: 327 KLFLMSWCPDTAKVKKXMLYSSSFDALKKSLXRSS 431
           K+  + +CPD A V++ MLY+SS  ALK SL   S
Sbjct: 91  KVIFVQYCPDNAPVRRRMLYASSVRALKASLGLES 125


>AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated
           protein 60, isoform c protein.
          Length = 152

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
 Frame = +2

Query: 65  MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 238
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++K 
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60

Query: 239 -GGTGECXYGLFDFEYTHQCQXHVG 310
                EC Y   D E T Q Q   G
Sbjct: 61  VEDGKECRYAAVDVEVTVQRQGAEG 85



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +3

Query: 327 KLFLMSWCPDTAKVKKXMLYSSSFDALKKSLXRSS 431
           K+  + +CPD A V++ MLY+SS  ALK SL   S
Sbjct: 91  KVIFVQYCPDNAPVRRRMLYASSVRALKASLGLES 125


>L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.
          Length = 165

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 25/91 (27%), Positives = 51/91 (56%), Gaps = 17/91 (18%)
 Frame = +2

Query: 65  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 202
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE    ++             
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 203 -AEYEQFLEDLQK--GGTGECXYGLFDFEYT 286
            A +++F+ED++       +C Y +FDF++T
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFT 90



 Score = 35.5 bits (78), Expect = 0.033
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +3

Query: 327 KLFLMSWCPDTAKVKKXMLYSSSFDALKKSL 419
           K+  +  CPD A +KK M+Y+SS  A+K SL
Sbjct: 103 KIIFLQICPDGASIKKKMVYASSAAAIKTSL 133


>AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated
           protein 60, isoform a protein.
          Length = 165

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 25/91 (27%), Positives = 51/91 (56%), Gaps = 17/91 (18%)
 Frame = +2

Query: 65  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 202
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE    ++             
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 203 -AEYEQFLEDLQK--GGTGECXYGLFDFEYT 286
            A +++F+ED++       +C Y +FDF++T
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFT 90



 Score = 35.5 bits (78), Expect = 0.033
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +3

Query: 327 KLFLMSWCPDTAKVKKXMLYSSSFDALKKSL 419
           K+  +  CPD A +KK M+Y+SS  A+K SL
Sbjct: 103 KIIFLQICPDGASIKKKMVYASSAAAIKTSL 133


>AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated
           protein 60, isoform b protein.
          Length = 212

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 25/91 (27%), Positives = 51/91 (56%), Gaps = 17/91 (18%)
 Frame = +2

Query: 65  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 202
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE    ++             
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 203 -AEYEQFLEDLQK--GGTGECXYGLFDFEYT 286
            A +++F+ED++       +C Y +FDF++T
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFT 90



 Score = 35.5 bits (78), Expect = 0.033
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +3

Query: 327 KLFLMSWCPDTAKVKKXMLYSSSFDALKKSL 419
           K+  +  CPD A +KK M+Y+SS  A+K SL
Sbjct: 103 KIIFLQICPDGASIKKKMVYASSAAAIKTSL 133



 Score = 35.5 bits (78), Expect = 0.033
 Identities = 17/32 (53%), Positives = 22/32 (68%)
 Frame = +3

Query: 336 LMSWCPDTAKVKKXMLYSSSFDALKKSLXRSS 431
           L++ CPD A V++ MLY+SS  ALK SL   S
Sbjct: 154 LLNNCPDNAPVRRRMLYASSVRALKASLGLES 185


>Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 279 SKSNRPYXHSPVPPFCRSSRNCSYSALRSPTVST 178
           S  N P  HSP PPF  S  N SY+ ++  T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219


>Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 279 SKSNRPYXHSPVPPFCRSSRNCSYSALRSPTVST 178
           S  N P  HSP PPF  S  N SY+ ++  T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219


>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
            protein F52C9.1a protein.
          Length = 1336

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +3

Query: 333  FLMSWCPDTAKVKKXMLYSSSFDALKKSLXRSSEVHPSDRPLGSVSGGRRREAPRHRSPI 512
            FL S+C D A +   +  SSS  +   S+  S     +   LG +S G R  +    SP+
Sbjct: 1000 FLSSFCDDPAFLIPFVSNSSSSSSPPASIAHSPPSAFTAYSLGGMSSGNRLFSLSASSPV 1059

Query: 513  NSI 521
            NS+
Sbjct: 1060 NSV 1062


>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
            protein F52C9.1b protein.
          Length = 1331

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +3

Query: 333  FLMSWCPDTAKVKKXMLYSSSFDALKKSLXRSSEVHPSDRPLGSVSGGRRREAPRHRSPI 512
            FL S+C D A +   +  SSS  +   S+  S     +   LG +S G R  +    SP+
Sbjct: 1000 FLSSFCDDPAFLIPFVSNSSSSSSPPASIAHSPPSAFTAYSLGGMSSGNRLFSLSASSPV 1059

Query: 513  NSI 521
            NS+
Sbjct: 1060 NSV 1062


>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical
           protein C01C7.1 protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 456 LGSVSGGRRREAPRHRSPINSIYTRARDETEPA 554
           L ++S  R+   P  R P+ ++Y R +D   PA
Sbjct: 688 LTALSSSRKDPIPAPRGPVAAVYARGKDIPTPA 720


>Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical
           protein F40F11.2b protein.
          Length = 1607

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = -1

Query: 493 GASLRRPPETLPRGRSLGCTSELRXRDFF----RASNELEYNXFFLTLAVSGHHDI 338
           G   R   +  P G + G    ++  D F    ++SN +EYN F +   ++ +HD+
Sbjct: 72  GGLNREDQQPGPSGNNDGQYHVMQNNDSFAQHMQSSNTIEYNSFEMPTVINSNHDV 127


>Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical
           protein F40F11.2a protein.
          Length = 1593

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = -1

Query: 493 GASLRRPPETLPRGRSLGCTSELRXRDFF----RASNELEYNXFFLTLAVSGHHDI 338
           G   R   +  P G + G    ++  D F    ++SN +EYN F +   ++ +HD+
Sbjct: 58  GGLNREDQQPGPSGNNDGQYHVMQNNDSFAQHMQSSNTIEYNSFEMPTVINSNHDV 113


>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
           non-receptor tyrosinekinase protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 456 LGSVSGGRRREAPRHRSPINSIYTRARDETEPA 554
           L ++S  R+   P  R P+ ++Y R +D   PA
Sbjct: 688 LTALSSSRKDPIPAPRGPVAAVYARGKDIPTPA 720


>AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.6 protein.
          Length = 254

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 558 GERVRFRRELVCKCC 514
           G+ ++FR E VC+CC
Sbjct: 200 GKNIKFRTEKVCRCC 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,526,088
Number of Sequences: 27780
Number of extensions: 231445
Number of successful extensions: 763
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)