Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_G11
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce...   119   2e-28
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    25   5.8  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   7.6  
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|...    25   7.6  

>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 83

 Score =  119 bits (287), Expect = 2e-28
 Identities = 50/69 (72%), Positives = 58/69 (84%)
 Frame = +3

Query: 81  SERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRAXL 260
           SE RKHKLK+LV  P S+FMDVKCPGC+ ITTVFSHAQ VV+C  C+++LCQPTGG+A L
Sbjct: 14  SEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCASVLCQPTGGKARL 73

Query: 261 TEGCSFXRK 287
            EGCSF RK
Sbjct: 74  MEGCSFRRK 82


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = -1

Query: 393 DGSIVVNLKNITPLYNWKKNLKIK*GSVQDLNVNVVFX*KNILQLX*HGHQWVDKGSLSI 214
           D   V   + + PL+  +K+L  K   ++D +  V F  KNI  L     Q + K S  I
Sbjct: 307 DDFTVYRYERLNPLHVAEKSLNGKLSELKDGDCVVAFSRKNIFTLKSKIDQALGKKSAVI 366

Query: 213 QRRPPLSVRD 184
               P  VR+
Sbjct: 367 YGSLPPEVRN 376


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 8   FFSRLCIKAVTMPLAIDLLHPS 73
           F SR C+K+ T  L  + LHPS
Sbjct: 681 FASRKCVKSFTDLLQANWLHPS 702


>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 203 HHSLCVTKNCCNLVTARALNIHEIRVRMW 117
           +H+L   ++ C L  ++ L+ H I +R W
Sbjct: 37  YHALKAKESTCFLTFSKTLDEHAISMRKW 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,564,846
Number of Sequences: 5004
Number of extensions: 25166
Number of successful extensions: 60
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)