Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_G11
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal pro...   122   1e-28
U23517-8|AAM98041.1|  605|Caenorhabditis elegans A kinase anchor...    30   0.95 
U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor...    30   0.95 
U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte grow...    28   3.8  
AC024200-2|AAF35997.2|  189|Caenorhabditis elegans Hypothetical ...    27   5.1  
U52002-5|AAB37729.2|  534|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 27 protein.
          Length = 83

 Score =  122 bits (295), Expect = 1e-28
 Identities = 53/69 (76%), Positives = 59/69 (85%)
 Frame = +3

Query: 84  ERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRAXLT 263
           E R HKLKRLV HPNSYFMDVKC GC+KI+TVFSHA  VVVC GC+T+LCQPT G+A LT
Sbjct: 15  EIRCHKLKRLVQHPNSYFMDVKCSGCFKISTVFSHATTVVVCVGCNTVLCQPTRGKAKLT 74

Query: 264 EGCSFXRKQ 290
           EGCSF +KQ
Sbjct: 75  EGCSFRKKQ 83



 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +2

Query: 41 MPLAIDLLHPSP 76
          MPLA+DLLHP P
Sbjct: 1  MPLAVDLLHPEP 12


>U23517-8|AAM98041.1|  605|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform c protein.
          Length = 605

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 78  RSERRKHKLKRLVPHPNSYFM-DVKCPGCYKITTVFSHAQRVVVCAGCSTILC 233
           R ERR  + +  +   + Y++ D +CP C    T F+   R   C  C  +LC
Sbjct: 519 RRERRLTESELQLGKTSPYWIPDSECPNCMLCNTRFTIITRRHHCRACGRVLC 571


>U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform b protein.
          Length = 1284

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 78  RSERRKHKLKRLVPHPNSYFM-DVKCPGCYKITTVFSHAQRVVVCAGCSTILC 233
           R ERR  + +  +   + Y++ D +CP C    T F+   R   C  C  +LC
Sbjct: 519 RRERRLTESELQLGKTSPYWIPDSECPNCMLCNTRFTIITRRHHCRACGRVLC 571


>U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte growth
           factor-regulatedtk substrate (hrs) family protein 1
           protein.
          Length = 729

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 153 PGCYKITTVFSHAQRVVVCAGCSTILCQPTGGR 251
           P CY+  +VFS   R   C  C  I C     R
Sbjct: 161 PECYRCRSVFSVFTRKHHCRACGQIFCDKCSSR 193


>AC024200-2|AAF35997.2|  189|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.10 protein.
          Length = 189

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 96  HKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVC 209
           H  +R VP    + MD+KCP C+K+         +V+C
Sbjct: 91  HHSRRSVP---VFMMDMKCPVCHKVVPSDDADIHLVMC 125


>U52002-5|AAB37729.2|  534|Caenorhabditis elegans Hypothetical
           protein F08B4.5 protein.
          Length = 534

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 66  ILPLRSERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 221
           + PLR +  K +    VP P+  F+D   P  +  + +F H   ++ C   S
Sbjct: 338 LTPLRKDYEKTQFI-FVPGPDDPFVDTVLPRPHLPSLLFKHISPIISCTFAS 388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,851,068
Number of Sequences: 27780
Number of extensions: 147737
Number of successful extensions: 303
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)