Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_G09
         (404 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   1.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   1.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   3.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   5.3  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 111 SPSQIRTRIPVMPILLQQAWLNPQVRFEH 197
           SP +   +  V   LLQQ W +P++R+ +
Sbjct: 99  SPDESSLKYEV-EFLLQQQWYDPRLRYSN 126


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 111 SPSQIRTRIPVMPILLQQAWLNPQVRFEH 197
           SP +   +  V   LLQQ W +P++R+ +
Sbjct: 99  SPDESSLKYEV-EFLLQQQWYDPRLRYSN 126


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 111 SPSQIRTRIPVMPILLQQAWLNPQVRFEH 197
           SP +   +  V   LLQQ W +P++R+ +
Sbjct: 150 SPDESSLKYEV-EFLLQQQWYDPRLRYSN 177


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 111 SPSQIRTRIPVMPILLQQAWLNPQVRFEH 197
           SP +   +  V   LLQQ W +P++R+ +
Sbjct: 99  SPDESSLKYEV-EFLLQQQWYDPRLRYSN 126


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 5   FFPFKFAILKV 37
           FFPF FA+L V
Sbjct: 408 FFPFLFAVLNV 418


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 5   FFPFKFAILKV 37
           FFPF F IL V
Sbjct: 366 FFPFSFLILNV 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,742
Number of Sequences: 438
Number of extensions: 1629
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)