Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_G05
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...   106   2e-24
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    28   1.3  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    25   7.1  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    25   9.4  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    25   9.4  

>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score =  106 bits (255), Expect = 2e-24
 Identities = 52/126 (41%), Positives = 78/126 (61%)
 Frame = +2

Query: 269 GEITKSVFMSQSTDIYTNLALEDWLYXNMDFTNHHVMMVWXNXPCVVIGRHQNPWLEANV 448
           G +   V + +S + Y NLALE++LY N   T  H ++++ N P V+IGR+QNPW+EANV
Sbjct: 21  GLLQAKVVVCKSVNPYFNLALENYLYENS--TAKHCLLLYTNSPSVIIGRNQNPWVEANV 78

Query: 449 PLLSEKEIALARRNSGGGTVYHDRGNLNITFFAPRERYDXNYNLKLINXALFTSFGIKST 628
            L  +  + + RR SGGGTV+HD GNLN +    RE +    N  ++  AL  + G+ + 
Sbjct: 79  KLCRDNFVNIIRRKSGGGTVFHDFGNLNYSVLMNREEFSHTENASIMIQAL-RNLGVHAR 137

Query: 629 INERQD 646
           +N+R D
Sbjct: 138 LNQRHD 143


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = +2

Query: 248 ERVLPT-EG-EITKSVFMSQSTDIYTNLALED 337
           E  +PT  G EI +S+F+SQ+  ++ N++LED
Sbjct: 718 EAAIPTFRGLEIPESLFLSQNVFVFLNVSLED 749


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 563 HISHVGQRMLYSDFLGHDK-QYHHHCYDVPKLFLFQKVVEHSPPAKDFDV 417
           H++    R +  DFLG D  +Y++     P++F   K+ +  PP K+ D+
Sbjct: 489 HVTLKPPRTVVFDFLGKDSIRYYNEVEVDPQVFKNLKIFKR-PPKKEGDL 537


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 178 CWSCTENIYKQCCGIQQSGRIKKGESASN*GG 273
           CW    N Y   CG++       GE+ +  GG
Sbjct: 278 CWVDAPNSYNAGCGVENPSGPSYGEAFNKNGG 309


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/47 (29%), Positives = 17/47 (36%)
 Frame = +3

Query: 126 SWLKLWCKAXYPAVLAHLLVLHRKHI*AMLRHPAKWPHQKRRECFQL 266
           SW   W K+   +V       H  HI   +  P  W H     CF L
Sbjct: 192 SWQASWFKSMLTSVR---YAKHGDHIDIYVSDPLTWNHTDTNPCFVL 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,638
Number of Sequences: 5004
Number of extensions: 48759
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)