Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_G05
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92780-3|CAB07178.2| 289|Caenorhabditis elegans Hypothetical pr... 115 3e-26
Z11115-18|CAI46594.1| 243|Caenorhabditis elegans Hypothetical p... 29 3.8
Z11115-17|CAA77455.3| 228|Caenorhabditis elegans Hypothetical p... 29 3.8
AY513235-1|AAS21678.1| 228|Caenorhabditis elegans thiamine pyro... 29 3.8
AF104858-1|AAC79090.1| 390|Caenorhabditis elegans putative RNA-... 28 5.0
AF063007-5|AAD47125.1| 712|Caenorhabditis elegans Prion-like-(q... 28 5.0
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil... 28 6.6
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil... 28 6.6
AC024765-5|AAF60527.3| 975|Caenorhabditis elegans Hypothetical ... 27 8.7
>Z92780-3|CAB07178.2| 289|Caenorhabditis elegans Hypothetical
protein C45G3.3 protein.
Length = 289
Score = 115 bits (277), Expect = 3e-26
Identities = 53/122 (43%), Positives = 76/122 (62%), Gaps = 1/122 (0%)
Frame = +2
Query: 284 SVFMSQSTDIYTNLALEDWLYXNMDFT-NHHVMMVWXNXPCVVIGRHQNPWLEANVPLLS 460
+V S S+ I+ NLA E+ ++ + N ++++W N P VVIGRHQNPW+E N+P +
Sbjct: 11 TVLKSTSSCIFENLAYEEHIFRTHNVAQNGEILLMWSNRPAVVIGRHQNPWIEVNIPYAN 70
Query: 461 EKEIALARRNSGGGTVYHDRGNLNITFFAPRERYDXNYNLKLINXALFTSFGIKSTINER 640
+ I + RR+SGGGTVYHD GNLNI+ ++ NLK I+ AL F +K N+R
Sbjct: 71 KNNIQIVRRHSGGGTVYHDLGNLNISLLTTHAQHCRPKNLKFISDALNQQFSVKIVPNKR 130
Query: 641 QD 646
D
Sbjct: 131 DD 132
>Z11115-18|CAI46594.1| 243|Caenorhabditis elegans Hypothetical
protein ZK637.9b protein.
Length = 243
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 251 RVLPTEGEITKS-VFMSQSTDIYTNLALEDWLY 346
+++ T E+T S VF+ S+ + ++ LE+W+Y
Sbjct: 206 KLISTSNEVTTSQVFLKSSSSLIFSIELENWVY 238
>Z11115-17|CAA77455.3| 228|Caenorhabditis elegans Hypothetical
protein ZK637.9a protein.
Length = 228
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 251 RVLPTEGEITKS-VFMSQSTDIYTNLALEDWLY 346
+++ T E+T S VF+ S+ + ++ LE+W+Y
Sbjct: 191 KLISTSNEVTTSQVFLKSSSSLIFSIELENWVY 223
>AY513235-1|AAS21678.1| 228|Caenorhabditis elegans thiamine
pyrophosphokinase protein.
Length = 228
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 251 RVLPTEGEITKS-VFMSQSTDIYTNLALEDWLY 346
+++ T E+T S VF+ S+ + ++ LE+W+Y
Sbjct: 191 KLISTSNEVTTSQVFLKSSSSLIFSIELENWVY 223
>AF104858-1|AAC79090.1| 390|Caenorhabditis elegans putative
RNA-binding protein PRP-1 protein.
Length = 390
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 485 RNSGGGTVYHDRGNLNITFFAPRERYDXN 571
R GGGT + DRG + APRE D N
Sbjct: 103 RGRGGGTGFVDRGGRGRSNGAPRESRDNN 131
>AF063007-5|AAD47125.1| 712|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 59
protein.
Length = 712
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 485 RNSGGGTVYHDRGNLNITFFAPRERYDXN 571
R GGGT + DRG + APRE D N
Sbjct: 103 RGRGGGTGFVDRGGRGRSNGAPRESRDNN 131
>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
protein 3, isoform b protein.
Length = 1361
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Frame = +3
Query: 267 RGRSPSQCSCLNRLIFIRTWLWRIGC-IXTW---TSQIIML*WC---GXMXHVWLLEDI 422
RG++ L F + WL+RIGC + W T I + +C G + HV + D+
Sbjct: 60 RGKAVGNTVALTARAFFQLWLFRIGCFVQRWAWSTIFISLFLYCLCLGGLRHVTIETDL 118
>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
protein 3, isoform a protein.
Length = 1358
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Frame = +3
Query: 267 RGRSPSQCSCLNRLIFIRTWLWRIGC-IXTW---TSQIIML*WC---GXMXHVWLLEDI 422
RG++ L F + WL+RIGC + W T I + +C G + HV + D+
Sbjct: 60 RGKAVGNTVALTARAFFQLWLFRIGCFVQRWAWSTIFISLFLYCLCLGGLRHVTIETDL 118
>AC024765-5|AAF60527.3| 975|Caenorhabditis elegans Hypothetical
protein Y39A3CR.3 protein.
Length = 975
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 434 LEANVPLLSEKEIALARRNSGGGT-VYHDRGNLNITFFAPRERYDXNYNLKLINXALFTS 610
+ A VP+ EK ++ A +YH N TF+ P+ + + L LIN L T
Sbjct: 326 IRATVPI-EEKSMSEAMHTKAMNMKLYHGS---NKTFYTPKSKIEEIILLLLINEVLSTR 381
Query: 611 FGIKSTINERQ 643
+ STIN+ Q
Sbjct: 382 -EVLSTINQYQ 391
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,044,073
Number of Sequences: 27780
Number of extensions: 286991
Number of successful extensions: 574
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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