Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_G04
         (626 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   0.52 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   0.52 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   0.52 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   0.52 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.8  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   8.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   8.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   8.4  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 603  IFLLEPLXSIFLCEAVGKSHFSCLTXSVXYVETWPAKY 490
            IFL+    S F+   +    F C+   + Y+ + P+ Y
Sbjct: 1006 IFLIAMTGSFFIAACLHPQEFWCIVPGIIYLLSIPSMY 1043


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 603  IFLLEPLXSIFLCEAVGKSHFSCLTXSVXYVETWPAKY 490
            IFL+    S F+   +    F C+   + Y+ + P+ Y
Sbjct: 1006 IFLIAMTGSFFIAACLHPQEFWCIVPGIIYLLSIPSMY 1043


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 603  IFLLEPLXSIFLCEAVGKSHFSCLTXSVXYVETWPAKY 490
            IFL+    S F+   +    F C+   + Y+ + P+ Y
Sbjct: 1006 IFLIAMTGSFFIAACLHPQEFWCIVPGIIYLLSIPSMY 1043


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 603  IFLLEPLXSIFLCEAVGKSHFSCLTXSVXYVETWPAKY 490
            IFL+    S F+   +    F C+   + Y+ + P+ Y
Sbjct: 1006 IFLIAMTGSFFIAACLHPQEFWCIVPGIIYLLSIPSMY 1043


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 245  ENTGCCPVSCSNTLAARVSLSPDSP 171
            ENT C P + S    +   + PD P
Sbjct: 2280 ENTECHPDASSTMAPSTTPMVPDKP 2304


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 409 QNYPWRRSCHAA 374
           Q YPW R  H A
Sbjct: 209 QIYPWMRKVHVA 220


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 409 QNYPWRRSCHAA 374
           Q YPW R  H A
Sbjct: 209 QIYPWMRKVHVA 220


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 409 QNYPWRRSCHAA 374
           Q YPW R  H A
Sbjct: 209 QIYPWMRKVHVA 220


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,408
Number of Sequences: 336
Number of extensions: 2947
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)