Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_G04
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 254 3e-68
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 254 3e-68
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 191 4e-49
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 170 9e-43
02_02_0196 + 7685933-7685961,7686086-7686284 88 6e-18
03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962 46 2e-05
11_04_0418 - 17443989-17444082,17445153-17445406,17445709-174457... 29 2.3
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 29 4.0
01_01_0582 - 4317216-4317731 28 5.3
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 254 bits (623), Expect = 3e-68
Identities = 122/167 (73%), Positives = 136/167 (81%)
Frame = +1
Query: 121 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 300
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 301 VHCTVRGAKAXXILXRGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 480
+ TVRG KA +L GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 481 FYVVLGRPGFNVXHRXRKTXKVGFPHRLTKEDAXKWFQQKYDGIILN 621
FYVVL R G+ V R R +VG HR+TKEDA KWFQ KY+G+ILN
Sbjct: 129 FYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 175
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 254 bits (623), Expect = 3e-68
Identities = 122/167 (73%), Positives = 136/167 (81%)
Frame = +1
Query: 121 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 300
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 301 VHCTVRGAKAXXILXRGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 480
+ TVRG KA +L GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 481 FYVVLGRPGFNVXHRXRKTXKVGFPHRLTKEDAXKWFQQKYDGIILN 621
FYVVL R G+ V R R +VG HR+TKEDA KWFQ KY+G+ILN
Sbjct: 129 FYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 175
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 191 bits (465), Expect = 4e-49
Identities = 101/169 (59%), Positives = 118/169 (69%), Gaps = 2/169 (1%)
Frame = +1
Query: 121 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 300
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 301 VHCTVRGAKAXXILXRGLKVREYELRRDNF--SATGNFGFGIQEHIDLGIKYDPSIGIYG 474
+ TVRG KA +L GLK+ DN S T + + +YDPS GIYG
Sbjct: 69 CYVTVRGEKAMQLLESGLKIIRIV---DNLIPSVTRSTRAKRINLSNQCFRYDPSTGIYG 125
Query: 475 LDFYVVLGRPGFNVXHRXRKTXKVGFPHRLTKEDAXKWFQQKYDGIILN 621
+DFYVVL R G+ V R R +VG HR+TKEDA KWFQ KY+G+ILN
Sbjct: 126 MDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 174
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 170 bits (413), Expect = 9e-43
Identities = 84/109 (77%), Positives = 92/109 (84%)
Frame = +1
Query: 121 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 300
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 35 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 94
Query: 301 VHCTVRGAKAXXILXRGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 447
+ TVRG KA +L GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 95 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 143
>02_02_0196 + 7685933-7685961,7686086-7686284
Length = 75
Score = 87.8 bits (208), Expect = 6e-18
Identities = 38/58 (65%), Positives = 44/58 (75%)
Frame = +1
Query: 448 YDPSIGIYGLDFYVVLGRPGFNVXHRXRKTXKVGFPHRLTKEDAXKWFQQKYDGIILN 621
YDPS GIYG+DFYVVL R G+ V R R +VG HR+TKEDA KWFQ KY+G+ILN
Sbjct: 11 YDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 68
>03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962
Length = 279
Score = 46.0 bits (104), Expect = 2e-05
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Frame = +1
Query: 121 NVMRNLHIRKLCLNICVG-ESGDR--LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNE 291
NV + + K+ +N +G E+G+ L A K L +TGQ PV +KA+ +V SF IR
Sbjct: 98 NVHQVPKVEKIVVNCGLGAEAGNSKGLESAMKDLAMITGQWPVKTKAKKSVASFKIREGN 157
Query: 292 KIAVHCTVRGAKAXXILXR----GL-KVREY-ELRRDNFSATGNFGFGIQEH-IDLGIKY 450
I + T+RG L R GL + ++ + ++F GNF G+++ + I Y
Sbjct: 158 TIGIAVTLRGRVMFNFLDRLINLGLPRTMDFLGVNPNSFDGHGNFTIGLRDQGVFPEIPY 217
Query: 451 DPSIGIYGLDFYVV 492
+ G+D +V
Sbjct: 218 EVGGKKNGMDVCIV 231
>11_04_0418 -
17443989-17444082,17445153-17445406,17445709-17445783,
17446156-17446377,17446789-17446941,17447031-17447167,
17447615-17447933
Length = 417
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 289 EKIAVHCTVRGAKAXXILXRGLK 357
EKIA + TVRG KA +L GLK
Sbjct: 280 EKIACYVTVRGEKAMQLLESGLK 302
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 289 EKIAVHCTVRGAKAXXILXRGLK 357
EKIA + TVRG KA +L GLK
Sbjct: 403 EKIACYVTVRGEKAMQLLEIGLK 425
>01_01_0582 - 4317216-4317731
Length = 171
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -1
Query: 284 RRIPKDRTVYLALENTGCCPVSCSNTLAARVSLSPDSPTQMF 159
RRI ++ + L TGC P S S AARV S Q F
Sbjct: 98 RRILRENKKRILLCATGCVPASSSAAAAARVPYDAYSYAQNF 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,902,553
Number of Sequences: 37544
Number of extensions: 305835
Number of successful extensions: 791
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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