Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_G04
(626 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal prote... 277 6e-75
U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal prote... 276 1e-74
U29488-1|AAA68773.2| 338|Caenorhabditis elegans Serpentine rece... 28 6.3
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical pr... 27 8.3
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 27 8.3
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 27 8.3
>U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.2 protein.
Length = 196
Score = 277 bits (678), Expect = 6e-75
Identities = 129/168 (76%), Positives = 145/168 (86%)
Frame = +1
Query: 115 SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEK 294
++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEK
Sbjct: 15 ARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEK 74
Query: 295 IAVHCTVRGAKAXXILXRGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYG 474
IAVHCTVRG KA IL +GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDPSIGIYG
Sbjct: 75 IAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYG 134
Query: 475 LDFYVVLGRPGFNVXHRXRKTXKVGFPHRLTKEDAXKWFQQKYDGIIL 618
+DFYVVL R G + R R +VG HR+ +E++ KWFQQKYDGIIL
Sbjct: 135 MDFYVVLDRAGRRIAKRRRAPGRVGPSHRVEREESIKWFQQKYDGIIL 182
>U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.1 protein.
Length = 196
Score = 276 bits (676), Expect = 1e-74
Identities = 129/167 (77%), Positives = 142/167 (85%)
Frame = +1
Query: 118 KNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI 297
+NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKI
Sbjct: 16 RNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKI 75
Query: 298 AVHCTVRGAKAXXILXRGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGL 477
AVHCTVRG KA IL +GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDP IGIYG+
Sbjct: 76 AVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGM 135
Query: 478 DFYVVLGRPGFNVXHRXRKTXKVGFPHRLTKEDAXKWFQQKYDGIIL 618
DFYVVL R G V R R ++G HR+ KE+ KWFQQKYDGIIL
Sbjct: 136 DFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 182
>U29488-1|AAA68773.2| 338|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 31 protein.
Length = 338
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 327 FSSSDCTMDSNLFITTDTKRPHCIPSLGKYRLLS 226
F SS+C ++SNL+ T+ C SL RLLS
Sbjct: 97 FQSSECLIESNLYYYTNLFSSLCCISLFFDRLLS 130
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical protein
Y76A2B.1 protein.
Length = 1057
Score = 27.5 bits (58), Expect = 8.3
Identities = 21/71 (29%), Positives = 27/71 (38%)
Frame = +2
Query: 377 GVTTSPPRVILASVFKNTLTWVSSTIPQLEFMDWTFTSYLAGQVSTXHTEXVRXEKWDFP 556
GV +S PR I ASV + + SST T ++ + H E P
Sbjct: 946 GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005
Query: 557 TASQRKMLXSG 589
T S R M G
Sbjct: 1006 TPSSRNMQSCG 1016
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
F32H2.5 protein.
Length = 2586
Score = 27.5 bits (58), Expect = 8.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 620 LSMIPSYFCWNHXIASSFVR 561
LS + ++ WNH I SSF++
Sbjct: 2159 LSSLDNFLSWNHPIVSSFIK 2178
>Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical
protein C09F9.3 protein.
Length = 800
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -3
Query: 318 SDCTMDSNLFITTDTKRPHCIPSLGK---YRLLSCELLQHL 205
S CT+D F D+K+ C+ S+ K Y +++ E+ H+
Sbjct: 205 SICTIDGQRFSLGDSKKNFCLQSVSKAFNYAIVASEIGSHV 245
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 27.5 bits (58), Expect = 8.3
Identities = 21/71 (29%), Positives = 27/71 (38%)
Frame = +2
Query: 377 GVTTSPPRVILASVFKNTLTWVSSTIPQLEFMDWTFTSYLAGQVSTXHTEXVRXEKWDFP 556
GV +S PR I ASV + + SST T ++ + H E P
Sbjct: 946 GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005
Query: 557 TASQRKMLXSG 589
T S R M G
Sbjct: 1006 TPSSRNMQSCG 1016
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 27.5 bits (58), Expect = 8.3
Identities = 21/71 (29%), Positives = 27/71 (38%)
Frame = +2
Query: 377 GVTTSPPRVILASVFKNTLTWVSSTIPQLEFMDWTFTSYLAGQVSTXHTEXVRXEKWDFP 556
GV +S PR I ASV + + SST T ++ + H E P
Sbjct: 946 GVFSSIPRAITASVRHSEMPSSSSTTNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVP 1005
Query: 557 TASQRKMLXSG 589
T S R M G
Sbjct: 1006 TPSSRNMQSCG 1016
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,450,162
Number of Sequences: 27780
Number of extensions: 263197
Number of successful extensions: 612
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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