Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_G04
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    29   0.028
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.11 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   5.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 29.5 bits (63), Expect = 0.028
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
 Frame = +1

Query: 160 NICVGESGDRLTRAAKVLEQL--TGQQPVFSKARYTVR--SFGIRRNEKIAVHCTVRGAK 327
           N+    SGD    AA    ++  T +  V    R+ V      + RN+ +A+HC  +G  
Sbjct: 678 NLAAEHSGDYTCVAANPAAEVRYTAKLQVKVPPRWIVEPTDVSVERNKHVALHCQAQGVP 737

Query: 328 AXXILXR---GLKVREY-ELRRDNFSATGNFGFGIQEHI 432
              I+ +   G K  EY ELR   ++   + G  + +H+
Sbjct: 738 TPTIVWKKATGSKSGEYEELRERAYTKILSNGTLLLQHV 776


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +1

Query: 277 IRRNEKIAVHCTVRGAKAXXILXR---GLKVREY-ELRRDNFSATGNFGFGIQEHI 432
           + RN+ +A+HC  +G     I+ +   G K  EY ELR   ++   + G  + +H+
Sbjct: 717 VERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRERAYTKILSNGTLLLQHV 772


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -3

Query: 63  WYTRHDYNFSKR 28
           WY  HDYN   +
Sbjct: 208 WYLNHDYNLENK 219


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -3

Query: 63  WYTRHDYNFSKR 28
           WY  HDYN   +
Sbjct: 208 WYLNHDYNLENK 219


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 233 SLYFPRLGIQCGLLVSVVMKRLLSIVQS 316
           SL+   LGI+CG  +  +++  L I Q+
Sbjct: 462 SLFRINLGIECGYEIKKLLRYKLLISQN 489


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 374 CGVTTSPPRVILASVFKN 427
           C +   PPRVIL+S  K+
Sbjct: 626 CNLGLEPPRVILSSGAKS 643


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 374 CGVTTSPPRVILASVFKN 427
           C +   PPRVIL+S  K+
Sbjct: 626 CNLGLEPPRVILSSGAKS 643


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 374 CGVTTSPPRVILASVFKN 427
           C +   PPRVIL+S  K+
Sbjct: 626 CNLGLEPPRVILSSGAKS 643


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,796
Number of Sequences: 438
Number of extensions: 3352
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)